Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0732.Seq
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 2e-21
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 0.033
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09) 29 2.6
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_40035| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38) 28 5.9
SB_34507| Best HMM Match : ABA_WDS (HMM E-Value=9.1) 28 5.9
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 28 5.9
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_7238| Best HMM Match : rve (HMM E-Value=0.0017) 28 5.9
SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42) 28 7.8
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94) 28 7.8
SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057) 28 7.8
SB_57925| Best HMM Match : PAPA-1 (HMM E-Value=8.4) 28 7.8
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_10414| Best HMM Match : Rho_N (HMM E-Value=0.0015) 28 7.8
SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3) 28 7.8
>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 99.5 bits (237), Expect = 2e-21
Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Frame = +1
Query: 256 HKNPTLRQGPAPFKATSAAGHKPLP---QPGAGQLDKPPVFTRDGKKWLIEYQKGNSNLV 426
HKNP LR A+S KP P + KPPVF GKKW++E+Q+GN NL
Sbjct: 201 HKNPNLR-------ASSVVKDKPKPTIAKKPVAVTKKPPVFELQGKKWMVEHQEGNKNLT 253
Query: 427 VENADMNNVVYMFRCRDSALTVRGKVNGSCWTRAPSAXXXXXXXXXXXXXXXXXXXXXXY 606
+E + M+ VVY++ C+DS + ++GK+N
Sbjct: 254 IEGS-MSQVVYIYSCKDSVVIIKGKINSITLDNCKKCAVVFDDAIATVEFVNCQSVQCQV 312
Query: 607 LGKVPTVSIDKTDGCQIYL 663
GKVPTVSIDKTDGCQ+YL
Sbjct: 313 NGKVPTVSIDKTDGCQVYL 331
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +3
Query: 510 VVLDSCTKCAVVFDNLVSSIEFVNCQSVQMQVFGQ 614
+ LD+C KCAVVFD+ ++++EFVNCQSVQ QV G+
Sbjct: 281 ITLDNCKKCAVVFDDAIATVEFVNCQSVQCQVNGK 315
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 28.3 bits (60), Expect(2) = 0.033
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 214 HN*LLAQSEAGHADHKNPTLRQGPAPFKATSAAGHKPLPQP 336
HN LLA++ GH H+ R ++A S A PLP P
Sbjct: 591 HNNLLARNGKGHPCHQRTLFR---LQWEAPSQAATPPLPSP 628
Score = 26.2 bits (55), Expect(2) = 0.033
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 151 TSPTCRSMTAALSSPKSIEAKH 216
T P C S T + S+P +EA H
Sbjct: 541 TDPDCHSSTGSPSTPDMVEAAH 562
>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
Length = 712
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 256 HKNPTLRQGPAPFKATSAAGHKPLPQPGAGQLDKPP 363
H PTL P A H L +P LDKPP
Sbjct: 259 HSPPTLTLDKPPHSALDKPPHSALDKPPHSALDKPP 294
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 398 SISHFLPSRVKTGGLSSCPAPGCGSGLCPAADVALNGAGP*R 273
S+ H +K LSS GC CP ++A+ G P R
Sbjct: 288 SVKHIPFDFIKIESLSSLQVDGCTGLKCPPLNIAMKGVKPAR 329
>SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 394 IEYQKGNSNLVVENADMNNVVYMFRCRDSALTVRGKVNG 510
+ + KGN NL+V + D N+ V +F ++ L + VNG
Sbjct: 527 VAFDKGNKNLIVADRD-NHRVQLFNRKNGKLVKKFGVNG 564
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 85 LVHPHRLPREDFPLRRPCCQTWTSPTCRSM 174
+ HP P RP C +W+ P C S+
Sbjct: 202 VTHPWTTTTVTHPWSRPYCHSWSCPYCHSL 231
>SB_40035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 127 RRPCCQTWTSPTCR 168
R+P C TWT P CR
Sbjct: 362 RKPYCSTWTCPDCR 375
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 402 PKGQLQFSGRERGHEQRCVHVPLSRLRPDGPRE--GQRVVLDSCTKCAVVFDNLVSSI 569
PKG++++ R G PLS L P P G R+ L C C V + V S+
Sbjct: 964 PKGRIRWVHRHAGLSALEPSSPLSPLTPGAPDAPGGHRLPLGPCKPCLKVNSSKVRSL 1021
>SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)
Length = 283
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -3
Query: 590 GLAVDELDAGYEVVEHDRALGARVQHDPLTFPRTVRAESRQRNMYT-TLFMSAFSTTKLE 414
G+ +D++D ++ R + + +Q +P T+R+ +MYT SA S L
Sbjct: 110 GIHIDDVDIRGLNLQSTRQVVSVIQQNPTLLSGTIRSNLDPLDMYTDDEIWSALSDVNLS 169
Query: 413 LPFWYSISHFLPSRVKTGGLS 351
P ++ L R++ GG++
Sbjct: 170 -PVMDKWAYDLEHRIEEGGVN 189
>SB_34507| Best HMM Match : ABA_WDS (HMM E-Value=9.1)
Length = 231
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 510 PVDLPADRQGGVATTEHVHNVVHVRV 433
P+ LP+D +G + T HVH H+ V
Sbjct: 106 PILLPSDHRGALLITRHVHKHGHLGV 131
>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 229
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 97 HRLPRED--FPLRRPCCQTWTSPTCRSMTAALSSP-KSIEAKHN*LLAQSEAGHA 252
HR +D FP RP C+T TSP +SP ++ A+ +L+ S HA
Sbjct: 92 HRPHMQDVYFPCHRPTCKTCTSPVTALTCKTCTSPDTALHARR--VLSLSPPSHA 144
>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1634
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 510 PVDLPADRQGGVATTEHVHNVVHVRV 433
P+ LP+D +G + T HVH H+ V
Sbjct: 1245 PILLPSDHRGALLITRHVHKHGHLGV 1270
>SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 510 PVDLPADRQGGVATTEHVHNVVHVRV 433
P+ LP+D +G + T HVH H+ V
Sbjct: 293 PILLPSDHRGALLITRHVHKHGHLGV 318
>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 235 SEAGHADHKNPTLRQGPAPFKATSAAGHKPLPQPGAG 345
S++ + + + GP P AT ++ +P P PG+G
Sbjct: 63 SKSSKSSSTSSSTTHGPTPVPATPSSPPRPTPGPGSG 99
>SB_7238| Best HMM Match : rve (HMM E-Value=0.0017)
Length = 367
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 510 PVDLPADRQGGVATTEHVHNVVHVRV 433
P+ LP+D +G + T HVH H+ V
Sbjct: 84 PILLPSDHRGALLITRHVHKHGHLGV 109
>SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42)
Length = 347
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 590 GLAVDELDAGYEVVEHDRALGARVQHDPLTFPRTVRAESRQRNMYT-TLFMSAFSTTKLE 414
G+ +D++D ++ R + + +Q +P T+R+ +MYT SA S L
Sbjct: 167 GIHIDDVDIRGLNLQSTRQVVSVIQQNPTLLSGTIRSNLDPLDMYTDDEIWSALSDVNLS 226
Query: 413 LPFWYSISHFLPSRVKTGGLS 351
P + L R++ GG++
Sbjct: 227 -PVMDKWGYDLEHRIEEGGVN 246
>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
Length = 592
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 4 GSNCCPICKRTSNSFTQQDLCGLARAVLVHPHRLPREDFPLRRPCCQT 147
G N C I R ++S + G+ +H ++ FP R+P T
Sbjct: 46 GENLCGITGRETSSEPVLNTAGVVMETKLHRRKISSSPFPTRKPNINT 93
>SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)
Length = 1124
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 1 LGSNC-CPICKRTSNSFTQQDLCGLARAVLVHPHRLPREDFPLR 129
LGS C C R + + Q+ A + ++P+R+PRE F L+
Sbjct: 744 LGSQCFCIFISRGNINHDQRVTMAQAISEKINPNRIPREPFGLK 787
>SB_57925| Best HMM Match : PAPA-1 (HMM E-Value=8.4)
Length = 138
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 76 RAVLVHPHRLPREDFPLRRPCCQTWTSPTCRSMTAALSSPK 198
R PH L R RR ++W RS+ + SPK
Sbjct: 71 REATAFPHHLQRRSVSSRRTRSKSWKMKVLRSLASPNQSPK 111
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -3
Query: 617 TLPKYLHLYGLAVDELDAGYEVVEHDRALGARVQHDPLTFPRTVRAESRQRNMYTTLFMS 438
T P Y YG ++ GY + D G R H P FP V S N+ +T+ +
Sbjct: 31 TCPAYCSCYGEHRVDIYCGY--LADDSFSGLR--HVPRNFPMQVSLLSLYNNLISTIHSN 86
Query: 437 AF 432
AF
Sbjct: 87 AF 88
>SB_10414| Best HMM Match : Rho_N (HMM E-Value=0.0015)
Length = 916
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 1 LGSNC-CPICKRTSNSFTQQDLCGLARAVLVHPHRLPREDFPLR 129
LGS C C R + + Q+ A + ++P+R+PRE F L+
Sbjct: 278 LGSQCFCIFISRGNINHDQRVTMAQAISEKINPNRIPREPFGLK 321
>SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3)
Length = 586
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -3
Query: 569 DAGYEVVEHDRALGARVQHDPLTFPRTVRAESRQRNMYTTLFMSAFSTT-KLELPFWYSI 393
+AG + +EH R ++ P F R ES NM + A ++ ++Y +
Sbjct: 322 EAGMDELEHSRKY---LERFPEVFKRHEFYESNPANMQVREAVQAGGEPLRMTRGWYYDL 378
Query: 392 SHFLPSRVKTGGL 354
+H + +KTGGL
Sbjct: 379 NHDRGTYIKTGGL 391
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,673,903
Number of Sequences: 59808
Number of extensions: 418954
Number of successful extensions: 1431
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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