Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0732.Seq
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 410 PFWYSISHFLPSRVKTGGLSSCPAP 336
           PFW    H L +++KTG     P+P
Sbjct: 111 PFWDEDQHRLYAQIKTGSY-DYPSP 134


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 423 SGRERGHEQRC 455
           +G +RG+EQRC
Sbjct: 95  AGAQRGNEQRC 105


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 223 LLAQSEAGHADHKNPTLRQGPA 288
           L    EAG  + K+P LR  PA
Sbjct: 453 LSVSGEAGIEEVKSPVLRSPPA 474


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 223 LLAQSEAGHADHKNPTLRQGPA 288
           L    EAG  + K+P LR  PA
Sbjct: 453 LSVSGEAGIEEVKSPVLRSPPA 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,704
Number of Sequences: 438
Number of extensions: 3489
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)