Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0732.Seq
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    68   5e-12
At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met...    29   2.1  
At2g44520.1 68415.m05535 UbiA prenyltransferase family protein s...    28   6.4  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   6.4  
At5g62980.1 68418.m07902 dihydroneopterin aldolase, putative sim...    27   8.4  
At4g04220.1 68417.m00598 disease resistance family protein conta...    27   8.4  
At4g03050.1 68417.m00413 2-oxoglutarate-dependent dioxygenase, p...    27   8.4  

>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 33/111 (29%), Positives = 49/111 (44%)
 Frame = +1

Query: 331 QPGAGQLDKPPVFTRDGKKWLIEYQKGNSNLVVENADMNNVVYMFRCRDSALTVRGKVNG 510
           +P   +   P +  + G+KW +E Q G  +LV+   D    VY++ C+DS L ++GKVN 
Sbjct: 308 KPAFSKTGPPKMELQMGRKWAVENQIGKKDLVISECDSKQSVYIYGCKDSVLQIQGKVNN 367

Query: 511 SCWTRAPSAXXXXXXXXXXXXXXXXXXXXXXYLGKVPTVSIDKTDGCQIYL 663
               +                            G  PTVS+D T GCQ+YL
Sbjct: 368 ITIDKCTKVGVVFTDVVAAFEIVNCNNVEVQCQGSAPTVSVDNTTGCQLYL 418


>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
           methionyl-tRNA synthetase, putative / MetRS, putative
           similar to methionyl-tRNA synthetase [Oryza sativa]
           GI:4091008; contains Pfam profiles PF00133: tRNA
           synthetases class I (I, L, M and V), PF01588: Putative
           tRNA binding domain
          Length = 797

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 229 AQSEAGH-ADHKNPTLRQGPAPFKATSAAGHKPLPQPGAG-QLDKPPVFTRDGKKWLIEY 402
           A+ EA + AD  N T        KA+S  G KP PQP A  ++    +  R GK    E 
Sbjct: 592 ARDEAANLADQLNKTKLSDAKKQKASSKGGGKPKPQPAADREITMARLDIRVGKIVKAEK 651

Query: 403 QKGNSNLVVENADM 444
                 L VE  D+
Sbjct: 652 HPKADALYVEEIDV 665


>At2g44520.1 68415.m05535 UbiA prenyltransferase family protein
           similar to SP|Q12887 Protoheme IX farnesyltransferase,
           mitochondrial precursor (EC 2.5.1.-) (Heme O synthase)
           {Homo sapiens}, SP|P21592 COX10 {Saccharomyces
           cerevisiae}
          Length = 431

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 515 AGLVHQVRGRVRQPRIQHRVRQLPVRTDAGIWAKFQPFPS 634
           AGL + V G V+  R + RV Q PV   +     F P PS
Sbjct: 388 AGLTNSVSGEVKTQRRKKRVAQPPVAYASAAPFPFLPAPS 427


>At2g17930.1 68415.m02076 FAT domain-containing protein /
           phosphatidylinositol 3- and 4-kinase family protein
           contains Pfam profiles PF02259 FAT domain, PF00454
           Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
           domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 366 LHSGRQEVAYRVPKGQLQFSGRERGHEQRCVHVPLSRLRPDGPREGQRVVL 518
           L S  + V Y   K  LQ  G+  G  +R +  PL+    D P  G R+VL
Sbjct: 741 LWSHLRPVPYPWGKKALQILGKLGGRNRRFLKEPLTLECKDNPEHGLRLVL 791


>At5g62980.1 68418.m07902 dihydroneopterin aldolase, putative
           similar to SP|O33725 Dihydroneopterin aldolase (EC
           4.1.2.25) (DHNA) {Streptococcus pyogenes}; contains Pfam
           profile PF02152: dihydroneopterin aldolase
          Length = 131

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 483 PDGPREGQRVVLD----SCTKCAVVFDNLVSSIEFVNCQSVQMQVF-GQSSNRFHR 635
           P+    GQ  +LD     C K A + DNL  S+ +V+  +V  +V  G S N   R
Sbjct: 27  PEEKTLGQMFMLDIDAWMCLKKAGLSDNLADSVSYVDIYNVAKEVVEGSSRNLLER 82


>At4g04220.1 68417.m00598 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-2A [Lycopersicon
           pimpinellifolium] gi|3894389|gb|AAC78594
          Length = 811

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -2

Query: 405 LVLDKPLL--AVPSEDGRLVQLSSAGLRQ 325
           L+LD+ L+  A+PSE G LV+L +  LRQ
Sbjct: 183 LILDENLIGGAIPSEIGSLVELLTLTLRQ 211


>At4g03050.1 68417.m00413 2-oxoglutarate-dependent dioxygenase,
           putative (AOP3) strong similarity to AOP3 [Arabidopsis
           thaliana] GI:16118893; contains Pfam profile PF03171:
           2OG-Fe(II) oxygenase superfamily domain; identical to
           cDNA AOP3 GI:16118892
          Length = 289

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 563 QHRVRQLPVRTDAGIWAKFQPFPST 637
           QH++  L V+T  G W + +P P+T
Sbjct: 168 QHQIDGLEVKTKEGKWIRVKPAPNT 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,955,227
Number of Sequences: 28952
Number of extensions: 280163
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)