Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0731.Seq
(719 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52696 Cluster: Uncharacterized HTH-type transcriptiona... 140 4e-32
UniRef50_UPI00015C5D43 Cluster: hypothetical protein CKO_02367; ... 120 4e-26
UniRef50_A2VY60 Cluster: Regulatory protein, LysR; n=6; Burkhold... 90 4e-17
UniRef50_A0UF58 Cluster: Transcriptional regulator, LysR family;... 81 2e-14
UniRef50_A6TAT5 Cluster: Putative transcriptional regulator; n=1... 79 1e-13
UniRef50_Q89GG1 Cluster: Transcriptional regulatory protein; n=1... 76 1e-12
UniRef50_A3K5F2 Cluster: Transcriptional regulator; n=1; Sagittu... 70 7e-11
UniRef50_Q391E9 Cluster: Transcriptional regulator, LysR family;... 69 1e-10
UniRef50_Q475G5 Cluster: Regulatory protein, LysR:LysR, substrat... 69 2e-10
UniRef50_Q62KK4 Cluster: Transcptional regulator, LysR family; n... 67 4e-10
UniRef50_A7CCR0 Cluster: Transcriptional regulator, LysR family;... 66 8e-10
UniRef50_Q122V6 Cluster: Transcriptional regulator, LysR family;... 66 1e-09
UniRef50_A1W6X9 Cluster: Transcriptional regulator, LysR family;... 60 5e-08
UniRef50_P0ACR8 Cluster: Uncharacterized HTH-type transcriptiona... 60 7e-08
UniRef50_UPI00004DBCAD Cluster: UPI00004DBCAD related cluster; n... 58 3e-07
UniRef50_P0AE87 Cluster: Periplasmic protein cpxP precursor; n=2... 58 3e-07
UniRef50_Q0B1K1 Cluster: Transcriptional regulator, LysR family;... 57 4e-07
UniRef50_A0HDG7 Cluster: Transcriptional regulator, LysR family;... 56 9e-07
UniRef50_Q5PIR8 Cluster: Extracytoplasmic stress protein for pro... 56 1e-06
UniRef50_Q1YQB9 Cluster: Transcriptional regulator, LysR family ... 55 2e-06
UniRef50_A3W1R9 Cluster: Transcriptional regulator, LysR family ... 54 4e-06
UniRef50_Q3DZ59 Cluster: Regulatory protein, LysR:LysR, substrat... 53 8e-06
UniRef50_A0HD55 Cluster: Transcriptional regulator, LysR family ... 52 1e-05
UniRef50_A4FHZ4 Cluster: Transcriptional regulator, LysR family;... 52 2e-05
UniRef50_Q1LFG5 Cluster: Transcriptional regulator, LysR family;... 51 2e-05
UniRef50_Q9KIF0 Cluster: FkbR1; n=2; Actinomycetales|Rep: FkbR1 ... 50 6e-05
UniRef50_A2WRH0 Cluster: Putative uncharacterized protein; n=1; ... 50 8e-05
UniRef50_A3VL76 Cluster: Putative LysR-family transcriptional re... 49 1e-04
UniRef50_A0H7L6 Cluster: Transcriptional regulator, LysR family;... 48 2e-04
UniRef50_Q0S5Z1 Cluster: Probable transcriptional regulator, Lys... 48 2e-04
UniRef50_Q46Q42 Cluster: Regulatory protein, LysR:LysR, substrat... 47 5e-04
UniRef50_Q2BJH5 Cluster: LysR-family transcriptional regulator; ... 46 7e-04
UniRef50_Q67MJ1 Cluster: LysR family transcriptional regulator; ... 46 0.001
UniRef50_A3TPW4 Cluster: Putative transcriptional regulator; n=1... 46 0.001
UniRef50_Q3SGH4 Cluster: Oxidative stress transcriptional regula... 46 0.001
UniRef50_A7HCA5 Cluster: Transcriptional regulator, LysR family;... 46 0.001
UniRef50_A6VZT7 Cluster: Transcriptional regulator, LysR family ... 46 0.001
UniRef50_Q0M3S2 Cluster: Regulatory protein, LysR:LysR, substrat... 45 0.002
UniRef50_A1R2Z4 Cluster: Putative transcriptional regulator, Lys... 44 0.003
UniRef50_Q47XE5 Cluster: Transcriptional regulator, LysR family;... 44 0.004
UniRef50_Q1CWQ6 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_A7IMC0 Cluster: Transcriptional regulator, LysR family;... 44 0.005
UniRef50_Q0FMM0 Cluster: LysR-family transcriptional regulator; ... 43 0.007
UniRef50_A0HJS7 Cluster: Putative LysR-family transcriptional re... 43 0.007
UniRef50_Q1V682 Cluster: Putative transcriptional regulator prot... 43 0.009
UniRef50_A3VLP1 Cluster: LysR family transcriptional regulatory ... 43 0.009
UniRef50_A6UBA0 Cluster: Transcriptional regulator, LysR family;... 42 0.012
UniRef50_Q92AS3 Cluster: Transcription activator of glutamate sy... 42 0.015
UniRef50_Q1GLW4 Cluster: Transcriptional regulator LysR family; ... 42 0.015
UniRef50_A7DHN9 Cluster: Transcriptional regulator, LysR family;... 42 0.015
UniRef50_A3JD31 Cluster: Transcriptional regulator, LysR family ... 42 0.015
UniRef50_UPI0000DAE53B Cluster: hypothetical protein Rgryl_01000... 42 0.020
UniRef50_Q5X4A2 Cluster: Hydrogen peroxide-inducible genes activ... 42 0.020
UniRef50_A0TGX1 Cluster: Transcriptional regulator, LysR family;... 42 0.020
UniRef50_P52677 Cluster: Probable hydrogen peroxide-inducible ge... 42 0.020
UniRef50_Q7W1I2 Cluster: Putative LysR-family transcriptional re... 41 0.027
UniRef50_Q0M3Y7 Cluster: Regulatory protein, LysR:LysR, substrat... 41 0.027
UniRef50_A5WEU8 Cluster: Transcriptional regulator, LysR family;... 41 0.027
UniRef50_A4WD78 Cluster: Transcriptional regulator, LysR family;... 41 0.027
UniRef50_A4EDZ3 Cluster: Transcriptional regulatory protein; n=1... 41 0.027
UniRef50_A4A3P1 Cluster: Transcriptional regulator, LysR family ... 41 0.035
UniRef50_A0HD23 Cluster: Transcriptional regulator, LysR family ... 41 0.035
UniRef50_A0HC66 Cluster: Transcriptional regulator, LysR family;... 41 0.035
UniRef50_Q9RD21 Cluster: Putative LysR-family transcriptional re... 40 0.047
UniRef50_Q8NLL4 Cluster: Transcriptional regulator; n=3; Coryneb... 40 0.047
UniRef50_Q7WC66 Cluster: LysR-family transcriptional regulator; ... 40 0.047
UniRef50_Q2J7C4 Cluster: Transcriptional regulator, LysR family;... 40 0.047
UniRef50_Q3W213 Cluster: Regulatory protein, LysR:LysR substrate... 40 0.047
UniRef50_A3VR86 Cluster: Transcriptional regulator, LysR family ... 40 0.047
UniRef50_P20668 Cluster: HTH-type transcriptional regulator gltC... 40 0.047
UniRef50_Q7VYV1 Cluster: LysR-family transcriptional regulator; ... 40 0.062
UniRef50_Q4ZT12 Cluster: Regulatory protein, LysR:LysR, substrat... 40 0.062
UniRef50_Q2S7W9 Cluster: Transcriptional regulator; n=1; Hahella... 40 0.062
UniRef50_A3TNT5 Cluster: Putative LysR-family transcriptional re... 40 0.062
UniRef50_Q83PD6 Cluster: Cation-efflux pump fieF; n=70; Gammapro... 40 0.062
UniRef50_Q89XA4 Cluster: Transcriptional regulatory protein; n=2... 40 0.082
UniRef50_Q826F8 Cluster: Putative LysR-family transcriptional re... 40 0.082
UniRef50_Q4J414 Cluster: Regulatory protein, LysR:LysR substrate... 40 0.082
UniRef50_A6GDN8 Cluster: Transcriptional regulator; n=1; Plesioc... 40 0.082
UniRef50_Q7WCW0 Cluster: Probable LysR-family transcriptional re... 39 0.11
UniRef50_Q39HG1 Cluster: Transcriptional regulator, LysR family;... 39 0.11
UniRef50_Q1NI31 Cluster: Transcriptional regulator, LysR family ... 39 0.11
UniRef50_A4FN23 Cluster: LysR-family transcriptional regulator; ... 39 0.11
UniRef50_A3RU99 Cluster: Transcriptional regulators, LysR family... 39 0.11
UniRef50_Q7NSP2 Cluster: Hydrogen peroxide-inducible genes activ... 39 0.14
UniRef50_Q21B31 Cluster: Transcriptional regulator, LysR family;... 39 0.14
UniRef50_Q12EW2 Cluster: Transcriptional regulator, LysR family ... 39 0.14
UniRef50_A3K4Q2 Cluster: Probable LysR-family transcriptional re... 39 0.14
UniRef50_A0G459 Cluster: Transcriptional regulator, LysR family;... 39 0.14
UniRef50_Q7WMW6 Cluster: Putative LysR-family transcriptional re... 38 0.19
UniRef50_A6WFE7 Cluster: Transcriptional regulator, LysR family;... 38 0.19
UniRef50_A1HAX4 Cluster: Putative uncharacterized protein; n=1; ... 38 0.19
UniRef50_A5NZG7 Cluster: Transcriptional regulator, LysR family;... 38 0.25
UniRef50_A4FAR0 Cluster: Transcriptional regulator; n=2; Actinom... 38 0.25
UniRef50_A4YNR9 Cluster: Transcriptional regulator of oxidative ... 38 0.33
UniRef50_A3K7Z5 Cluster: Regulatory protein, LysR:LysR, substrat... 38 0.33
UniRef50_A3JT72 Cluster: Transcriptional regulator, LysR family ... 38 0.33
UniRef50_Q9K3X6 Cluster: Putative LysR-family transcriptional re... 37 0.44
UniRef50_Q46S80 Cluster: Regulatory protein, LysR:LysR, substrat... 37 0.44
UniRef50_A3SE04 Cluster: Putative uncharacterized protein; n=2; ... 37 0.44
UniRef50_A0Z6E2 Cluster: Transcriptional regulator, LysR family ... 37 0.44
UniRef50_Q7NKC0 Cluster: Nitrogen assimilation transcriptional a... 37 0.58
UniRef50_Q47Q09 Cluster: Putative LysR-family transcriptional re... 37 0.58
UniRef50_Q471E8 Cluster: Amidase; n=1; Ralstonia eutropha JMP134... 37 0.58
UniRef50_Q0S8J9 Cluster: Transcriptional regulator, LysR family ... 37 0.58
UniRef50_Q7UUN7 Cluster: Probable integral membrane protein; n=1... 36 0.76
UniRef50_Q6F9I5 Cluster: Putative transcriptional regulator; n=2... 36 0.76
UniRef50_Q65GU9 Cluster: YybE; n=2; Bacillus|Rep: YybE - Bacillu... 36 0.76
UniRef50_Q4K6W0 Cluster: Transcriptional regulator, LysR family;... 36 0.76
UniRef50_Q4JY11 Cluster: Putative transcriptional regulator; n=1... 36 0.76
UniRef50_Q12DF5 Cluster: Transcriptional regulator, LysR family;... 36 0.76
UniRef50_A6WBV3 Cluster: Transcriptional regulator, LysR family;... 36 0.76
UniRef50_A3YAR7 Cluster: Regulatory protein, LysR:LysR, substrat... 36 0.76
UniRef50_A3VR68 Cluster: Putative transcriptional regulator, Lys... 36 0.76
UniRef50_A0LA88 Cluster: Transcriptional regulator, LysR family;... 36 0.76
UniRef50_Q6N398 Cluster: Transcriptional regulator, LysR family;... 36 1.0
UniRef50_Q13R07 Cluster: Transcriptional regulator, LysR family;... 36 1.0
UniRef50_Q0HFP5 Cluster: Transcriptional regulator, LysR family;... 36 1.0
UniRef50_Q027B4 Cluster: Putative uncharacterized protein precur... 36 1.0
UniRef50_A5VCT6 Cluster: Transcriptional regulator, LysR family;... 36 1.0
UniRef50_A4ZPZ1 Cluster: Hydrogen peroxid-inducible genes activa... 36 1.0
UniRef50_P37499 Cluster: Uncharacterized HTH-type transcriptiona... 36 1.0
UniRef50_Q5GYQ1 Cluster: Galactose-binding protein regulator; n=... 36 1.3
UniRef50_Q12GU5 Cluster: Transcriptional regulator, LysR family;... 36 1.3
UniRef50_A6UGP0 Cluster: Transcriptional regulator, LysR family;... 36 1.3
UniRef50_A1UCZ9 Cluster: Transcriptional regulator, LysR family;... 36 1.3
UniRef50_Q47141 Cluster: Hca operon transcriptional activator; n... 36 1.3
UniRef50_Q83BM7 Cluster: Hydrogen peroxide-inducible genes activ... 35 1.8
UniRef50_Q7URH5 Cluster: Probable transcription regulator; n=1; ... 35 1.8
UniRef50_Q39LY6 Cluster: Transcriptional regulator, LysR family;... 35 1.8
UniRef50_Q1IRZ3 Cluster: Transcriptional regulator, LysR family;... 35 1.8
UniRef50_Q0LUY7 Cluster: Regulatory protein, LysR:LysR, substrat... 35 1.8
UniRef50_A6VTL6 Cluster: Transcriptional regulator, LysR family;... 35 1.8
UniRef50_A4FD06 Cluster: LysR-family transcriptional regulator; ... 35 1.8
UniRef50_A1RGH4 Cluster: Transcriptional regulator, LysR family;... 35 1.8
UniRef50_A0NMM0 Cluster: Transcriptional regulator; n=1; Stappia... 35 1.8
UniRef50_Q89VI5 Cluster: Transcriptional regulatory protein; n=7... 35 2.3
UniRef50_Q46Y32 Cluster: Regulatory protein, LysR:LysR, substrat... 35 2.3
UniRef50_Q2CBA9 Cluster: Transcriptional regulatory protein; n=1... 35 2.3
UniRef50_Q15VE5 Cluster: Transcriptional regulator, LysR family;... 35 2.3
UniRef50_Q143E2 Cluster: Nucleobase/Cation Symporter, (NCS1) Fam... 35 2.3
UniRef50_O30766 Cluster: Polyketide synthase modules 4 and 5; n=... 35 2.3
UniRef50_A7IF06 Cluster: Transcriptional regulator, LysR family;... 35 2.3
UniRef50_A7ICZ0 Cluster: Transcriptional regulator, LysR family;... 35 2.3
UniRef50_A4XEX1 Cluster: Transcriptional regulator, LysR family;... 35 2.3
UniRef50_A4FGE5 Cluster: LysR-family transcriptional regulator; ... 35 2.3
UniRef50_A4FE82 Cluster: LysR-family transcriptional regulator; ... 35 2.3
UniRef50_A0JYV6 Cluster: Transcriptional regulator, LysR family;... 35 2.3
UniRef50_Q82Q95 Cluster: Putative LysR-family transcriptional re... 34 3.1
UniRef50_Q7W9G9 Cluster: Probable LysR-family transcriptional re... 34 3.1
UniRef50_Q7NSL7 Cluster: Probable transcription regulator, LysR ... 34 3.1
UniRef50_Q13JN6 Cluster: Transcriptional regulator, LysR family;... 34 3.1
UniRef50_Q0C031 Cluster: Transcriptional regulator, LysR family;... 34 3.1
UniRef50_A6V1Z2 Cluster: Transcriptional regulator, LysR family;... 34 3.1
UniRef50_A4SYM5 Cluster: Transcriptional regulator, LysR family;... 34 3.1
UniRef50_A3VVC0 Cluster: Hydrogen peroxide-inducible genes activ... 34 3.1
UniRef50_A3IAK3 Cluster: Transcriptional regulators, LysR family... 34 3.1
UniRef50_Q7WNN3 Cluster: LysR-family transcriptioanl regulator; ... 34 4.1
UniRef50_Q3K843 Cluster: Transcriptional Regulator, LysR family;... 34 4.1
UniRef50_Q3DX02 Cluster: Regulatory protein, LysR:LysR, substrat... 34 4.1
UniRef50_Q1LCM0 Cluster: Transcriptional regulator, LysR family;... 34 4.1
UniRef50_Q0RSQ6 Cluster: Putative LysR-family transcriptional re... 34 4.1
UniRef50_A6WF12 Cluster: Transcriptional regulator, LysR family;... 34 4.1
UniRef50_A4F8I8 Cluster: LysR-family transcriptional regulator; ... 34 4.1
UniRef50_A2U4P4 Cluster: Transcriptional regulator, LysR family;... 34 4.1
UniRef50_Q67U97 Cluster: Putative uncharacterized protein P0025H... 34 4.1
UniRef50_Q9YBE8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_P39592 Cluster: Uncharacterized HTH-type transcriptiona... 34 4.1
UniRef50_Q89XS0 Cluster: Transcriptional regulatory protein; n=3... 33 5.4
UniRef50_Q62FI9 Cluster: Transcriptional regulator, LysR family;... 33 5.4
UniRef50_Q5FUF1 Cluster: Transcriptional regulator; n=1; Glucono... 33 5.4
UniRef50_Q46U73 Cluster: Regulatory protein, LysR:LysR, substrat... 33 5.4
UniRef50_Q46PT5 Cluster: Regulatory protein, LysR:LysR, substrat... 33 5.4
UniRef50_Q3K4C7 Cluster: Transcriptional Regulator, LysR family;... 33 5.4
UniRef50_Q398I3 Cluster: Transcriptional regulator, LysR family;... 33 5.4
UniRef50_Q5EXK6 Cluster: LysR-like regulatory protein; n=11; Ent... 33 5.4
UniRef50_Q1DBN8 Cluster: Transcriptional regulator, LysR family;... 33 5.4
UniRef50_A4ALQ4 Cluster: Conserved hypotethical protein; n=3; Ac... 33 5.4
UniRef50_A1UCU5 Cluster: Putative uncharacterized protein; n=4; ... 33 5.4
UniRef50_Q2TWV1 Cluster: Polyketide synthase modules and related... 33 5.4
UniRef50_Q7U388 Cluster: LysR-FAMILY transcriptional regulator; ... 33 7.1
UniRef50_Q72A86 Cluster: Transcriptional regulator, LysR family;... 33 7.1
UniRef50_Q9ZHZ7 Cluster: Rubisco operon transcriptional regulato... 33 7.1
UniRef50_Q3W4H7 Cluster: Putative uncharacterized protein; n=1; ... 33 7.1
UniRef50_Q28K72 Cluster: Transcriptional regulator LysR family; ... 33 7.1
UniRef50_A6SXB4 Cluster: Transcriptional regulator, LysR family;... 33 7.1
UniRef50_A2W4R0 Cluster: Regulatory protein, LysR; n=8; Proteoba... 33 7.1
UniRef50_A0VAE5 Cluster: Transcriptional regulator, LysR family ... 33 7.1
UniRef50_A0HI59 Cluster: Transcriptional regulator, LysR family;... 33 7.1
UniRef50_UPI0000D9C680 Cluster: PREDICTED: hypothetical protein;... 33 9.4
UniRef50_UPI00006CAF70 Cluster: Tesmin/TSO1-like CXC domain cont... 33 9.4
UniRef50_UPI0000660A93 Cluster: UPI0000660A93 related cluster; n... 33 9.4
UniRef50_Q4TFP9 Cluster: Chromosome undetermined SCAF4314, whole... 33 9.4
UniRef50_Q5FRA7 Cluster: Putative transcriptional regulator; n=1... 33 9.4
UniRef50_Q49722 Cluster: Putative uncharacterized protein ML0405... 33 9.4
UniRef50_Q47MN3 Cluster: Putative LysR-family transcriptional re... 33 9.4
UniRef50_Q39MW0 Cluster: Transcriptional regulator, LysR family;... 33 9.4
UniRef50_Q4J012 Cluster: Regulatory protein, LysR:LysR substrate... 33 9.4
UniRef50_Q1YDL8 Cluster: Transcriptional regulator, LysR family;... 33 9.4
UniRef50_Q1GSY1 Cluster: Transcriptional regulator, LysR family;... 33 9.4
UniRef50_A5B470 Cluster: Putative uncharacterized protein; n=1; ... 33 9.4
UniRef50_A1C9L5 Cluster: Putative uncharacterized protein; n=1; ... 33 9.4
UniRef50_A2BL07 Cluster: Conserved archaeal protein; n=1; Hypert... 33 9.4
>UniRef50_P52696 Cluster: Uncharacterized HTH-type transcriptional
regulator ybhD; n=16; Enterobacteriaceae|Rep:
Uncharacterized HTH-type transcriptional regulator ybhD
- Escherichia coli (strain K12)
Length = 317
Score = 140 bits (338), Expect = 4e-32
Identities = 79/125 (63%), Positives = 87/125 (69%), Gaps = 4/125 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
IDFTPLVNEPFVL CRRDHPLAKK + G ++ + R + +R +Q +
Sbjct: 157 IDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVG----YKMIGVRSSSGNRLLIEQQLAD 212
Query: 539 AGLVL----RSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
L STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII
Sbjct: 213 KPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 272
Query: 371 RRKDA 357
RRKDA
Sbjct: 273 RRKDA 277
>UniRef50_UPI00015C5D43 Cluster: hypothetical protein CKO_02367;
n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
protein CKO_02367 - Citrobacter koseri ATCC BAA-895
Length = 367
Score = 120 bits (289), Expect = 4e-26
Identities = 67/122 (54%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQ-NDWRTLLQRQPTVDRTTAGRQAL 543
IDFTPLVNEPFVL CRR+HPLA K + G + R+ + ++ A +
Sbjct: 212 IDFTPLVNEPFVLACRRNHPLASKQLVEWQELVGYKLIGVRSSSGNRLLIEHNLADK-PW 270
Query: 542 EAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
+ STSLGLVEAGLGISALPGLAMP + ++IGIPL+EPVIRRTLGIIRRK
Sbjct: 271 KLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPQTVHPTLIGIPLIEPVIRRTLGIIRRK 330
Query: 362 DA 357
DA
Sbjct: 331 DA 332
Score = 93.5 bits (222), Expect = 5e-18
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -2
Query: 649 KQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEV 518
KQLVEWQELVGYK+IGVRSSSGNRLLIE LADKPWKLDWFYEV
Sbjct: 235 KQLVEWQELVGYKLIGVRSSSGNRLLIEHNLADKPWKLDWFYEV 278
>UniRef50_A2VY60 Cluster: Regulatory protein, LysR; n=6;
Burkholderiaceae|Rep: Regulatory protein, LysR -
Burkholderia cenocepacia PC184
Length = 408
Score = 90.2 bits (214), Expect = 4e-17
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQ---RQPTVDRTTAGRQ 549
I+FTPL+++PFVL C R HPLAK+ + A ++GL+ + + Q + +D AG
Sbjct: 260 IEFTPLLDDPFVLACPRSHPLAKRKSVAWAELAGLE--YLAIAQGSGNRAVIDEALAGA- 316
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
A + L+EAGLG+ +P LAMP P+ + + LV+P IRRTLG+I+
Sbjct: 317 ADRPKWFCEVRHVPALVSLIEAGLGVGVVPRLAMPRGPHKVLASVALVDPPIRRTLGVIQ 376
Query: 368 RKDAGAAS 345
R+ G +S
Sbjct: 377 RRGRGLSS 384
>UniRef50_A0UF58 Cluster: Transcriptional regulator, LysR family;
n=33; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Burkholderia multivorans ATCC 17616
Length = 384
Score = 81.4 bits (192), Expect = 2e-14
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQ-PTVDRTTAGRQAL 543
IDF L+ E FV CRRDHPLA+K W L + +VD+T+ R L
Sbjct: 236 IDFKVLLQERFVAACRRDHPLARKKRVT----------WDELYAHEYVSVDKTSGNRLLL 285
Query: 542 EAGL---------VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIR 390
+ L V + +T LGL+EAGLG++A+P +AMP + + +PLV+PV++
Sbjct: 286 DQALSGVAPPVPSVCETRHVTTLLGLIEAGLGVAAVPSMAMPGRDHPILTSVPLVDPVVK 345
Query: 389 RTLGIIRRK 363
R +GI++R+
Sbjct: 346 RRVGIVKRR 354
>UniRef50_A6TAT5 Cluster: Putative transcriptional regulator; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative transcriptional regulator - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 299
Score = 78.6 bits (185), Expect = 1e-13
Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQ---RQPTVDRTTAGRQ 549
I+FTPL ++ +V CR DHPLA+K ++ + + D+ L + + +DR A
Sbjct: 159 IEFTPLADDRYVAACRHDHPLARKT--HLSWQAYFEQDYIGLDRVSGNRTLLDRELAHLT 216
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
+ + +T LG+VEAG+GI+A+P ++MP +S + +PL +PV+ RT+G+IR
Sbjct: 217 PARPS-ICETRHVTTMLGMVEAGIGIAAVPAMSMPAGEHSVLRAVPLTDPVVTRTVGLIR 275
>UniRef50_Q89GG1 Cluster: Transcriptional regulatory protein; n=10;
Proteobacteria|Rep: Transcriptional regulatory protein -
Bradyrhizobium japonicum
Length = 350
Score = 75.8 bits (178), Expect = 1e-12
Identities = 50/119 (42%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAG-VSGLQNDWRTLLQRQPTVDRTTAGRQAL 543
I+F LV +PFVL CR DHPLA + + VS + +D A R L
Sbjct: 198 IEFEKLVEDPFVLACRHDHPLASRKQVSWSDIVSHRVITVGRNSGNRALIDNALA-RYGL 256
Query: 542 EAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
+ A S SLGLVEAGLGI+ LP LA P A + I + L EP RT+GI+RR
Sbjct: 257 QLNWSYEVAHLSGSLGLVEAGLGIAVLPRLATPAAGHPIIHTVRLTEPEESRTIGIVRR 315
>UniRef50_A3K5F2 Cluster: Transcriptional regulator; n=1; Sagittula
stellata E-37|Rep: Transcriptional regulator - Sagittula
stellata E-37
Length = 307
Score = 69.7 bits (163), Expect = 7e-11
Identities = 40/121 (33%), Positives = 62/121 (51%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+DF PL ++ FV R+D PL + + + ++ Q T+ + ++ L+
Sbjct: 159 VDFIPLFDDEFVALTRKDDPLVENPSIAWSQLATRQLIGVNRSSGNRTLLDASLAKEGLK 218
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
S ++GLV+ G+G+S LPGLA AP + PLV P + RTLGII+RK
Sbjct: 219 LNWAHEVNHLSAAIGLVQHGVGVSVLPGLAYVDAPMDDLCITPLVAPTLSRTLGIIQRKG 278
Query: 359 A 357
A
Sbjct: 279 A 279
>UniRef50_Q391E9 Cluster: Transcriptional regulator, LysR family;
n=10; Burkholderia|Rep: Transcriptional regulator, LysR
family - Burkholderia sp. (strain 383) (Burkholderia
cepacia (strain ATCC 17760/ NCIB 9086 / R18194))
Length = 296
Score = 68.9 bits (161), Expect = 1e-10
Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLV 528
PL ++P+VL CR DHPLAK+ R A + + + + +R +G+
Sbjct: 161 PLTSDPYVLVCRDDHPLAKRRRIRWAALQ----PHPLIFAGEVSGNRGLLDGALKTSGVS 216
Query: 527 LRS----ASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
L S SST+LGLV GLG + +P LA+ Y I I LVEP + RTL ++ RK
Sbjct: 217 LHSFYEVQRSSTALGLVAEGLGAAVVPKLAIQKNAYPMIRTIELVEPAVSRTLVLVTRKS 276
Query: 359 A 357
A
Sbjct: 277 A 277
>UniRef50_Q475G5 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=4; Betaproteobacteria|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 304
Score = 68.5 bits (160), Expect = 2e-10
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQ-RQPTVDRTTAGRQALEAGL 531
PLV +PF CRRDHPLA++ + + G++ +P +DR GR + +
Sbjct: 161 PLVTDPFCFVCRRDHPLAQEKTVPWSALDGMRLVLLDFASGSRPLIDR-VFGRHGIVPRV 219
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
V S++ G+VEAG+G S LP ++P S ++ PLV P R + ++RR+D
Sbjct: 220 VQELGHSASVFGMVEAGIGASVLPTYSLPLPAASPLVWRPLV-PREERRIVMVRRED 275
>UniRef50_Q62KK4 Cluster: Transcptional regulator, LysR family;
n=27; Burkholderiaceae|Rep: Transcptional regulator,
LysR family - Burkholderia mallei (Pseudomonas mallei)
Length = 300
Score = 67.3 bits (157), Expect = 4e-10
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQ-RQPTVDRTTAGRQALEAGL 531
PL+ + F L R DHPLA + ++G + +P +D A + + AG+
Sbjct: 161 PLMTDSFCLVARADHPLAARDRVPWTALAGERLVLLDYASGSRPLIDAALAAHR-VAAGV 219
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
V S+T GLVEAG+G+S LP L++P SS++ PL P RT+ ++RR+D
Sbjct: 220 VQELGHSATVFGLVEAGVGVSVLPWLSLPLPAGSSLVARPLA-PRAERTVELVRRRD 275
>UniRef50_A7CCR0 Cluster: Transcriptional regulator, LysR family;
n=3; Ralstonia pickettii|Rep: Transcriptional regulator,
LysR family - Ralstonia pickettii 12D
Length = 299
Score = 66.1 bits (154), Expect = 8e-10
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLV 528
PL ++P+VL CR DHPLAK+ R + + + + +R+ +G+
Sbjct: 162 PLTSDPYVLVCRDDHPLAKRRRIRWQALQ----PHPLIFAGEVSGNRSLLDGALKASGVT 217
Query: 527 LRS----ASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
L S SS +LGLV GLG +A+P LA+ Y I + LVEP + RTL ++ RK
Sbjct: 218 LHSFYEVQRSSMALGLVAEGLGAAAVPRLAIQKNAYPMIRTVELVEPEVSRTLVLVTRKA 277
Query: 359 A 357
A
Sbjct: 278 A 278
>UniRef50_Q122V6 Cluster: Transcriptional regulator, LysR family;
n=2; Polaromonas|Rep: Transcriptional regulator, LysR
family - Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 307
Score = 65.7 bits (153), Expect = 1e-09
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGV--SGLQNDWRTLLQRQPTVDRTTAGRQA 546
I F + N+PFVL RR+HPLA+ + A V L R+ RQ D T +
Sbjct: 160 IAFESIHNDPFVLAMRREHPLARHKSVNWADVEKESLIAVARSSGNRQLLDDSLT--KAG 217
Query: 545 LEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
L + +T LG+VEAGLG++A+P +A+ + +++++G+PL +P R +G++ R
Sbjct: 218 LNPSFAFEVSHVATLLGMVEAGLGLAAVPRMALA-STHATLVGLPLRQPQTVRRVGLLTR 276
>UniRef50_A1W6X9 Cluster: Transcriptional regulator, LysR family;
n=12; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Acidovorax sp. (strain JS42)
Length = 310
Score = 60.1 bits (139), Expect = 5e-08
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVD--RTTAGRQALEAG 534
P + F L CR DHPLA++ AG WR L + P + R ++ RQ LEA
Sbjct: 161 PFCEDGFHLVCRADHPLARQPL--PAGRRSAAAQWRALAE-WPFIHLARHSSVRQYLEAA 217
Query: 533 L-------VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
++ +T +G+V AGLGIS +P L + H + PL P + R + +
Sbjct: 218 FHPHAMRTLMEVEQLATVMGMVRAGLGISVVPTLTLFHFQQEGLATRPLALPGLTRQIYL 277
Query: 374 IRRKDAG 354
+RR+D G
Sbjct: 278 VRRRDRG 284
>UniRef50_P0ACR8 Cluster: Uncharacterized HTH-type transcriptional
regulator yfeR; n=27; Proteobacteria|Rep:
Uncharacterized HTH-type transcriptional regulator yfeR
- Shigella flexneri
Length = 308
Score = 59.7 bits (138), Expect = 7e-08
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQ-RQPTVDRTTAGRQALEAGLV 528
+++EPF L C RD LA + + G + + +P +D A R ++A +V
Sbjct: 162 ILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALA-RNGIQANIV 220
Query: 527 LRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
+T +V AG+GIS LP LA+P P S + + + PV+ R L ++RRK+
Sbjct: 221 QEIGHPATLFPMVAAGIGISILPALALP-LPEGSPLVVKRITPVVERQLMLVRRKN 275
>UniRef50_UPI00004DBCAD Cluster: UPI00004DBCAD related cluster; n=2;
Xenopus tropicalis|Rep: UPI00004DBCAD UniRef100 entry -
Xenopus tropicalis
Length = 312
Score = 57.6 bits (133), Expect = 3e-07
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSG---LQNDWRTLLQRQPTVDRTTAGRQ 549
+ + L ++PFVL CRRD PLA + + + S + R+ ++ P D RQ
Sbjct: 157 LQYRHLFDDPFVLVCRRDDPLAARESVPWSAFSTRPCIVAGSRSSIR--PVTDAVFL-RQ 213
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
+ VL S ++ LV AG+GI+ALP LA+ ++ +PL P++ R +GI+
Sbjct: 214 RMPVHPVLEYPSVASCGALVAAGVGITALPMLALELLNMVELVALPLQRPLMSRPIGIVT 273
Query: 368 R 366
R
Sbjct: 274 R 274
>UniRef50_P0AE87 Cluster: Periplasmic protein cpxP precursor; n=27;
Enterobacteriaceae|Rep: Periplasmic protein cpxP
precursor - Shigella flexneri
Length = 166
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -2
Query: 358 PEQQAVLNEKHQQRMEQLRDVTQWQ 284
PEQQAVLNEKHQQRMEQLRDVTQWQ
Sbjct: 126 PEQQAVLNEKHQQRMEQLRDVTQWQ 150
>UniRef50_Q0B1K1 Cluster: Transcriptional regulator, LysR family;
n=2; Burkholderia ambifaria|Rep: Transcriptional
regulator, LysR family - Burkholderia cepacia (strain
ATCC 53795 / AMMD)
Length = 301
Score = 57.2 bits (132), Expect = 4e-07
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVL 525
L E F + HPL+KK + S + ++ R G AL GLVL
Sbjct: 168 LAIEAFHVVMPNGHPLSKKPGISLEEASHFP---MVSMPKESQTRRHLEGL-ALAGGLVL 223
Query: 524 RSASS----STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
+ A + +T + V+AG+G++ LPG A+P A + ++ PL +PV+ RTLGI+ KD
Sbjct: 224 QHAVTVSQFATVMQCVQAGVGLAILPGGAVPSALSAGLVSRPLTKPVVNRTLGIVLLKD 282
>UniRef50_A0HDG7 Cluster: Transcriptional regulator, LysR family;
n=1; Comamonas testosteroni KF-1|Rep: Transcriptional
regulator, LysR family - Comamonas testosteroni KF-1
Length = 296
Score = 56.0 bits (129), Expect = 9e-07
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAA------CRMAGVSGLQNDWRTLLQRQPTVDRTTA 558
+DF L +E FVL CR+DHPLA +++ V+ Q LL Q + T
Sbjct: 157 LDFEELASESFVLACRKDHPLATRSSICWSELAHQDCVTQAQGSGNRLLIDQALSNTVTR 216
Query: 557 GRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLG 378
E V + L LV G+G+ A+P A+ + + GIPLVEP + R++G
Sbjct: 217 PHWVCEVQHV------PSLLSLVRRGVGVGAVPQHAISG---TDLCGIPLVEPQVLRSIG 267
Query: 377 IIRRK 363
+I R+
Sbjct: 268 LISRR 272
>UniRef50_Q5PIR8 Cluster: Extracytoplasmic stress protein for
protein-mediated toxicities; n=12;
Enterobacteriaceae|Rep: Extracytoplasmic stress protein
for protein-mediated toxicities - Salmonella paratyphi-a
Length = 166
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -2
Query: 358 PEQQAVLNEKHQQRMEQLRDVTQWQ 284
PEQQAVLNEKHQQRMEQLRDV QWQ
Sbjct: 126 PEQQAVLNEKHQQRMEQLRDVAQWQ 150
>UniRef50_Q1YQB9 Cluster: Transcriptional regulator, LysR family
protein; n=1; gamma proteobacterium HTCC2207|Rep:
Transcriptional regulator, LysR family protein - gamma
proteobacterium HTCC2207
Length = 285
Score = 54.8 bits (126), Expect = 2e-06
Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
++FTPL + L C RDHPLA+ + G+ Q D T L T D R E
Sbjct: 145 LEFTPLFADKLELICHRDHPLAQHS----GGIEWQQLDQATFLDTGVTRDL----RPRQE 196
Query: 539 AGLVLRSASSSTSL-GLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
G + T+L ++ + LG+S LP LA+P P +I PLV P R + II RK
Sbjct: 197 GGQSKFDFPNLTTLMAMLRSNLGVSVLPSLAIP-KPAGELISRPLV-PSESREIYIITRK 254
Query: 362 D 360
D
Sbjct: 255 D 255
>UniRef50_A3W1R9 Cluster: Transcriptional regulator, LysR family
protein; n=1; Roseovarius sp. 217|Rep: Transcriptional
regulator, LysR family protein - Roseovarius sp. 217
Length = 308
Score = 54.0 bits (124), Expect = 4e-06
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAK-KAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQAL 543
+ F PL N+PF L CR+DHPLA+ ++ R + G L+ + T + L
Sbjct: 155 LQFVPLFNDPFRLVCRKDHPLAQARSPLRRQDLRG-----HRLISNKSTAGFSGLEDGGL 209
Query: 542 EAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
+ G L + + + L LV AG G + LP LA ++ + L + RT+G I R+
Sbjct: 210 DVGSTLSARNVISLLALVRAGAGATILPALATLSID-DTLCSLALDDATALRTVGFILRQ 268
>UniRef50_Q3DZ59 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=2; Chloroflexus|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Chloroflexus
aurantiacus J-10-fl
Length = 301
Score = 52.8 bits (121), Expect = 8e-06
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGL 531
TPL+NEP VL HPLA+++ M + L+++ R +L R + EAG
Sbjct: 158 TPLLNEPLVLIVSTTHPLARRSEVMM---TELRHE-RWILSPSSYELREATLKACREAGF 213
Query: 530 ----VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
VL + T + V AGLG+S +P LA+ A + ++ + + + + R+LG++ R
Sbjct: 214 TPQTVLEGGETETLVRFVAAGLGVSLVPALAV--AGCTDVVRLTVSDQHLTRSLGLVWRS 271
Query: 362 DAGAA 348
D A+
Sbjct: 272 DRTAS 276
>UniRef50_A0HD55 Cluster: Transcriptional regulator, LysR family
precursor; n=3; Burkholderiales|Rep: Transcriptional
regulator, LysR family precursor - Comamonas
testosteroni KF-1
Length = 332
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1
Query: 503 SLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
+L LVEAGLG++A+P LA+P + + + G+PL EP + RTLG+I+++
Sbjct: 265 ALALVEAGLGMAAIPQLALPES-HPKLRGVPLTEPQLWRTLGLIKKR 310
Score = 37.1 bits (82), Expect = 0.44
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 703 WSTSRSCCLVGVTIHWPKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFY 524
W+ R + + W + + W EL G +++ V S NRLL++Q +A P + +Y
Sbjct: 198 WTRERYVLAMLHSHAWACRSEIAWTELAGERLVSVSHQSSNRLLLDQVMAGLPDQPMAWY 257
Query: 523 E 521
E
Sbjct: 258 E 258
>UniRef50_A4FHZ4 Cluster: Transcriptional regulator, LysR family;
n=1; Saccharopolyspora erythraea NRRL 2338|Rep:
Transcriptional regulator, LysR family -
Saccharopolyspora erythraea (strain NRRL 23338)
Length = 303
Score = 51.6 bits (118), Expect = 2e-05
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQA---LEA 537
PLV + FV DHP + ++G + + R +V R T A A
Sbjct: 157 PLVRDRFVAVLPPDHPFTEAPEVAWEDLAG---EPFLAVGRDSSVRRLTDAAFAQIDAHA 213
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
++S +T GLV AGLG+SALP L +P ++ PLVEP + R L I R
Sbjct: 214 APAAEASSVATVGGLVAAGLGVSALPALVLPLVGAGPVVTRPLVEPEVDRRLDIALR 270
>UniRef50_Q1LFG5 Cluster: Transcriptional regulator, LysR family;
n=1; Ralstonia metallidurans CH34|Rep: Transcriptional
regulator, LysR family - Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839)
Length = 298
Score = 51.2 bits (117), Expect = 2e-05
Identities = 34/114 (29%), Positives = 59/114 (51%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
F L+ + F L CR DHPLA + R + ++ L T+ +Q ++ L AG
Sbjct: 164 FQSLIKDSFGLVCRVDHPLANRRTVRWSEIASLPM-IGTVAHKQ--IEGVP--EMELLAG 218
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
L ++ + + ++E GLG++ LP L +P + ++ +PL P + R LGI+
Sbjct: 219 SHLFVSNMLSLIAMLEEGLGVTILPSLGVP-SNARDLVFVPLTGPKVHRELGIL 271
>UniRef50_Q9KIF0 Cluster: FkbR1; n=2; Actinomycetales|Rep: FkbR1 -
Streptomyces hygroscopicus subsp. ascomyceticus
Length = 297
Score = 50.0 bits (114), Expect = 6e-05
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVD-RTTAGRQAL 543
+++TPL +E L H LA++ R A ++ + +P R R
Sbjct: 155 VEWTPLRDEALCLLVPPGHRLARRRRVRTAELAD-----EAFVALEPVFGLRQITDRLCA 209
Query: 542 EAG----LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
AG +VL S ST LV AGLG++ P P P + +PL +P RRT+G+
Sbjct: 210 AAGFVPRVVLESTELSTLRALVAAGLGVAVAPLTGSPSGPGDHAVAVPLDDPQARRTVGV 269
Query: 374 I 372
+
Sbjct: 270 V 270
>UniRef50_A2WRH0 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 304
Score = 49.6 bits (113), Expect = 8e-05
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+ FTPL + F+ +D LA+KA +++ L D+ TL ++P+ R ++
Sbjct: 89 LHFTPLCRDRFLAVVPKDSALARKA--QVSWKELLTLDFITL--QRPSAVRLLLEQELAR 144
Query: 539 AGLVLRSASSSTSL----GLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
+G L A S L +V GLG SA+P L + +PL+ P+I R +G+I
Sbjct: 145 SGRTLEVAFESHQLVTVGRMVANGLGASAVPALCEQQMDELGAVCVPLIGPIIERRVGLI 204
Query: 371 R 369
R
Sbjct: 205 R 205
>UniRef50_A3VL76 Cluster: Putative LysR-family transcriptional
regulator; n=1; Rhodobacterales bacterium HTCC2654|Rep:
Putative LysR-family transcriptional regulator -
Rhodobacterales bacterium HTCC2654
Length = 302
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVD---RTTAGRQ 549
+D+ L ++P + C DHP A++ G L++ L +R V TT +
Sbjct: 163 LDWQSLNSDPLCIICAVDHPFAERDC---VGWRELKDQPLILSRRDYGVRGMVETTLAKL 219
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
+ A +V ++ + G+G + LPG P I +PLV+PV+ R G+++
Sbjct: 220 NIRARVVAEVGFLGSAAWMSACGIGFAILPGRLARAQPAPGIRSVPLVDPVVARDAGLVK 279
Query: 368 RK 363
R+
Sbjct: 280 RR 281
>UniRef50_A0H7L6 Cluster: Transcriptional regulator, LysR family;
n=1; Comamonas testosteroni KF-1|Rep: Transcriptional
regulator, LysR family - Comamonas testosteroni KF-1
Length = 306
Score = 48.4 bits (110), Expect = 2e-04
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
+ L+ + F++ C DHPL+ R AG ++ TL ++ + + RQ ++A
Sbjct: 162 YEQLMEDQFLIICPDDHPLS-----RQAGPIPIET---TLDYPHVSMPSSASVRQYIDAD 213
Query: 533 LVLRS--------ASSSTSLG-LVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTL 381
L+ + ++G LV AGLGISALP A+ + IPL P I+R L
Sbjct: 214 LLSKGLYFAPVFEVDHIATIGALVSAGLGISALPETAISLLQADRLAQIPLSAPGIQRPL 273
Query: 380 GIIRRKDAGAASGFKR 333
GI+ R+ A +S ++
Sbjct: 274 GIVMRRHAPRSSAARK 289
>UniRef50_Q0S5Z1 Cluster: Probable transcriptional regulator, LysR
family protein; n=1; Rhodococcus sp. RHA1|Rep: Probable
transcriptional regulator, LysR family protein -
Rhodococcus sp. (strain RHA1)
Length = 306
Score = 48.0 bits (109), Expect = 2e-04
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVL 525
L ++ F HP A + A R + ++G R +E G V+
Sbjct: 166 LTSDSFYCAVAPTHPFADRPALRWSDLAGQPFIAFGPESSIAAPVRRAVEDARIELGPVM 225
Query: 524 RSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR---RKDAG 354
++ + GL AGLG++A+P L +P ++ ++ IPL +P + RT+ +++ R
Sbjct: 226 QAQNIGAVAGLAAAGLGVTAVPELVLPMISFAGLVHIPL-QPTVERTISLVQVAGRPQTA 284
Query: 353 AASGF 339
+ GF
Sbjct: 285 STRGF 289
>UniRef50_Q46Q42 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Ralstonia eutropha JMP134|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 297
Score = 46.8 bits (106), Expect = 5e-04
Identities = 33/118 (27%), Positives = 53/118 (44%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLV 528
PLV++ F L C H LA+K ++G + L + A L+ V
Sbjct: 161 PLVHDTFHLVCPTTHVLARKRRITPQMLAG--QPFIHLSRTSSVRQHLDAALHPLKLSSV 218
Query: 527 LRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAG 354
+ +T LV+AGLG+S +P LA+ + PL P + R + ++R +D G
Sbjct: 219 MEVEHLATVAALVQAGLGVSVVPSLALFQFQRDGLAVRPLQMPSLVRDICLVRLRDRG 276
>UniRef50_Q2BJH5 Cluster: LysR-family transcriptional regulator;
n=1; Neptuniibacter caesariensis|Rep: LysR-family
transcriptional regulator - Neptuniibacter caesariensis
Length = 312
Score = 46.4 bits (105), Expect = 7e-04
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQN-----DWRTLLQRQPTVDRTTAG 555
+ +TP++ + + + H LA+KA R +S L D T Q +
Sbjct: 159 LSYTPVLKDRYGVVVPSGHHLAEKAIIRWDEISSLPQLHLTEDTGTRSQLRKLEKENDLD 218
Query: 554 RQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
Q AG+ + + + L ++ GLGIS LP LA + + IPL EP + R + I
Sbjct: 219 LQLQGAGIEVSTPAGLAEL--IKTGLGISLLPSLAASTRSFDELHFIPLDEPALFREICI 276
Query: 374 IRRK 363
I RK
Sbjct: 277 ISRK 280
>UniRef50_Q67MJ1 Cluster: LysR family transcriptional regulator;
n=1; Symbiobacterium thermophilum|Rep: LysR family
transcriptional regulator - Symbiobacterium thermophilum
Length = 273
Score = 46.0 bits (104), Expect = 0.001
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKA----ACRMAGVSGLQNDWRTLLQRQPTVDRTTAGR 552
+D+ PL+ EP +L DHPLA A ++ V+G + + D A
Sbjct: 130 LDWQPLLTEPILLALPPDHPLAADGPPHPAIPLSAVAG--EPFLIMKPGYGFRDLVLAAC 187
Query: 551 QA--LEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLG 378
QA + SA T +V AGLG++ +P +A + S + +PL + RTL
Sbjct: 188 QAAGFSPQIAFESAQIETLQAMVAAGLGVTLVPQMAADRSLRPSPVFVPLAGAPLTRTLA 247
Query: 377 IIRRKD 360
+ R+D
Sbjct: 248 LAWRRD 253
>UniRef50_A3TPW4 Cluster: Putative transcriptional regulator; n=1;
Janibacter sp. HTCC2649|Rep: Putative transcriptional
regulator - Janibacter sp. HTCC2649
Length = 292
Score = 46.0 bits (104), Expect = 0.001
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 521 SASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD---AGA 351
SA +T GLV AGLG++ LP A ++ IGIPL RRT+G+ R D A
Sbjct: 220 SADLATIEGLVSAGLGVAVLPA---QFAGHTGTIGIPLASSAARRTIGLTWRSDRDLAPP 276
Query: 350 ASGFKRETSTTNGAV 306
A+ F TT G +
Sbjct: 277 AARFVAFVGTTTGNI 291
>UniRef50_Q3SGH4 Cluster: Oxidative stress transcriptional
regulator; n=1; Thiobacillus denitrificans ATCC
25259|Rep: Oxidative stress transcriptional regulator -
Thiobacillus denitrificans (strain ATCC 25259)
Length = 301
Score = 45.6 bits (103), Expect = 0.001
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSG----LQNDWRTLLQRQPTVDRTTAGRQALE 540
PL +EPF DH LA + A +A + L ++ L R+ +D A E
Sbjct: 159 PLFHEPFYAALPADHALAAREALSVADIMAEKLLLLDEGHCL--REQALDVCGARSSGRE 216
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSS--IIGI-PLVEPVIRRTLGIIR 369
+R+ S T +V GLG++ LP LA+ AP + ++ I P P RT+G++
Sbjct: 217 E---VRATSLETLRQMVGMGLGLTLLPALAVDAAPRQTRKLVEIRPFRSPPPGRTIGLVW 273
Query: 368 RKDAGAASGFKRETSTTNGAV 306
R+ A F+R +T ++
Sbjct: 274 RRRAPFPETFERLAATLKASL 294
>UniRef50_A7HCA5 Cluster: Transcriptional regulator, LysR family;
n=2; Anaeromyxobacter|Rep: Transcriptional regulator,
LysR family - Anaeromyxobacter sp. Fw109-5
Length = 307
Score = 45.6 bits (103), Expect = 0.001
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKK----AACRMAGVSGLQNDWRTLLQRQPTVDRTTAGR 552
++ + +PFVL RDHPL + +A + G L D L+ Q +D A
Sbjct: 163 VEHAEIARDPFVLATPRDHPLGARSGPASAAELRGADVLLLDDGHCLRAQ-ALD-VCARA 220
Query: 551 QALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGI-PLVEPVIRRTLGI 375
+A E L R+ S T + +V G G++ LP LA+ + + P PV RT+ +
Sbjct: 221 RAHE--LEFRATSLPTLVQMVAGGAGVTLLPELALAAETRRGDLRLRPFAAPVPHRTIAL 278
Query: 374 IRRKDAGAASGFKRETSTTNGA 309
+ R+ + A +R T A
Sbjct: 279 VWRRRSPLAPALQRLARTVREA 300
>UniRef50_A6VZT7 Cluster: Transcriptional regulator, LysR family
precursor; n=21; Gammaproteobacteria|Rep:
Transcriptional regulator, LysR family precursor -
Marinomonas sp. MWYL1
Length = 293
Score = 45.6 bits (103), Expect = 0.001
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVD---RTTAGRQ 549
+ F PL + F+ +DHPL ++ + L+ D+ TL QR +V +T +
Sbjct: 155 LSFYPLYEDRFIAILPKDHPLEEQDTICWQAL--LEYDFITL-QRPSSVRAMIESTLHKA 211
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
+E + + +T +V G+G++ +P L A I P++ P IRR +G+I
Sbjct: 212 GIELNVAFDAHQLATVGRMVSEGMGVAVVPALCRQQAIEQGAICRPVIAPEIRRRVGVI 270
>UniRef50_Q0M3S2 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Caulobacter sp. K31|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Caulobacter sp. K31
Length = 358
Score = 45.2 bits (102), Expect = 0.002
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRT--TAGRQALEAGL 531
L EPF+ DHPLA +A + + L D L D+T G A G
Sbjct: 217 LFAEPFLAALPPDHPLAGRA---VIAETDLARDILVLADGHCLRDQTMEACGSDAALGG- 272
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPL 408
LR+AS ST L +V AG G + +PGLA A + I+ PL
Sbjct: 273 ALRAASLSTLLNMVAAGYGTTLIPGLAAGAAQDAGIVLRPL 313
>UniRef50_A1R2Z4 Cluster: Putative transcriptional regulator, LysR
family; n=1; Arthrobacter aurescens TC1|Rep: Putative
transcriptional regulator, LysR family - Arthrobacter
aurescens (strain TC1)
Length = 305
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = -1
Query: 509 STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAGAASGFKRE 330
ST + +VE G+ ++ +P L P P + ++ IP++ PV +R++G++ RK A+ +
Sbjct: 231 STHIAMVEQGVAVALVPRLGRPPLP-AGVVAIPVIRPVQQRSVGVVYRKTMTASPNIRLA 289
Query: 329 TS 324
S
Sbjct: 290 VS 291
>UniRef50_Q47XE5 Cluster: Transcriptional regulator, LysR family;
n=6; Gammaproteobacteria|Rep: Transcriptional regulator,
LysR family - Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) (Vibriopsychroerythus)
Length = 307
Score = 44.0 bits (99), Expect = 0.004
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
I FTP+ + + CR DHP A+ + W+ L +++ + T+ + E
Sbjct: 165 ITFTPIWEDQLGVVCREDHPFAEMT----------ELHWKELRKQRLIRNGTSRLLEDTE 214
Query: 539 AGLVLRSA----SSSTSL-GLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
A +L + S+ SL ++E GLGI+ LP A P S + IPL P I R +GI
Sbjct: 215 AEPLLSDSQFLISNMLSLIAMLEEGLGITTLPWFAFP-KNNSKLRFIPLTTPKIVRHIGI 273
Query: 374 IRRKD 360
++ K+
Sbjct: 274 VQLKN 278
>UniRef50_Q1CWQ6 Cluster: Putative uncharacterized protein; n=1;
Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
protein - Myxococcus xanthus (strain DK 1622)
Length = 125
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = -1
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
AG+V+ +S TS G A +G+ L A+ P +++ G+P+ P +RR LG+ +
Sbjct: 48 AGMVVGGLASGTSRGAAVALVGLGPLVAAALDWVPMAALFGLPMDGPTLRRELGV--SDE 105
Query: 359 AGAASGFKR 333
A GF R
Sbjct: 106 ASLLEGFPR 114
>UniRef50_A7IMC0 Cluster: Transcriptional regulator, LysR family;
n=8; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Xanthobacter sp. (strain Py2)
Length = 320
Score = 43.6 bits (98), Expect = 0.005
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = -1
Query: 716 DFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTT--AGRQA- 546
DF PL EP V HPLA +A R+A L++ +L+ + R A R+A
Sbjct: 181 DFEPLCREPLVAVLPSGHPLATQAEIRLA---DLRDTPFIMLESGLALHRIVLDASRRAG 237
Query: 545 LEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
+ RS+ ++ L AGLG++ LP + +++ + L EP + ++ + R
Sbjct: 238 FLPAIAARSSQIDFTMELAAAGLGVAFLPRMIAAQRHDAAVCQVRLAEPDLEWSMAMAWR 297
Query: 365 KDA 357
+ A
Sbjct: 298 RGA 300
>UniRef50_Q0FMM0 Cluster: LysR-family transcriptional regulator;
n=1; Roseovarius sp. HTCC2601|Rep: LysR-family
transcriptional regulator - Roseovarius sp. HTCC2601
Length = 300
Score = 43.2 bits (97), Expect = 0.007
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAA-CRMAGVS-------GLQNDWRTLLQRQPTVDRTTAG 555
T + +PF L C +HPLA++ A R+A + G + LL P + T
Sbjct: 167 TEIAADPFGLACCAEHPLARRRAPVRLADIDPQELIHLGTETGSSRLLAAHPGLPET--- 223
Query: 554 RQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
L+ G LRS S+ L LV AG+G++ LP A+ I+ +P+ + V+ R L +
Sbjct: 224 ---LKTG-PLRSHSTIAQLCLVRAGIGVALLPRNAVGLFNDPGIVFVPVSDLVLERKLYL 279
Query: 374 I 372
+
Sbjct: 280 L 280
>UniRef50_A0HJS7 Cluster: Putative LysR-family transcriptional
regulator; n=1; Comamonas testosteroni KF-1|Rep:
Putative LysR-family transcriptional regulator -
Comamonas testosteroni KF-1
Length = 145
Score = 43.2 bits (97), Expect = 0.007
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLV 528
P ++ F + C DHPLA K + ++ W + + R ++ RQ L+A
Sbjct: 10 PFCSDGFYMVCPGDHPLADKVELSLEDLT----PWPFI-----HLARHSSVRQYLDAAFF 60
Query: 527 LRSASS-------STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
R + +T +GLV+AGLGI+ P L++ H ++ L+ P + R + ++R
Sbjct: 61 PRKMQTFVEVEQLATVMGLVQAGLGITVAPALSLFHFDKPGLVARHLLLPGMDRQIYMVR 120
Query: 368 RKD 360
+++
Sbjct: 121 KRE 123
>UniRef50_Q1V682 Cluster: Putative transcriptional regulator
protein; n=1; Vibrio alginolyticus 12G01|Rep: Putative
transcriptional regulator protein - Vibrio alginolyticus
12G01
Length = 304
Score = 42.7 bits (96), Expect = 0.009
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
++F L + CR+DHPLA+ VS Q + P T +A +
Sbjct: 156 LNFDLLFRDYLCFVCRQDHPLAEHKQ-----VSWEQAHQYASIGVSPGNSLRTLADEAFQ 210
Query: 539 A-GLV----LRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
GL L ++ +ST LG++ +GLG + L + + IP+V+PV R++G+
Sbjct: 211 RIGLTYDPELSASHTSTLLGMISSGLGSTILSSTIGELSNNVEVRFIPIVQPVQYRSVGL 270
Query: 374 IRRKD 360
I RK+
Sbjct: 271 ITRKE 275
>UniRef50_A3VLP1 Cluster: LysR family transcriptional regulatory
protein; n=1; Rhodobacterales bacterium HTCC2654|Rep:
LysR family transcriptional regulatory protein -
Rhodobacterales bacterium HTCC2654
Length = 325
Score = 42.7 bits (96), Expect = 0.009
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSG--LQNDWRTLLQRQPTVDRTTAGRQALEAG 534
PL EPFV R+ PLA+ + ++ L +R+ + + Q E
Sbjct: 168 PLFTEPFVAAVNRNSPLARMNRLSLEQIAREPLVQVYRSANREYSDHMFSALMEQGYELN 227
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDA 357
+V ++ + LGLV +G+G+S +P ++ + +++I +PL + V TL + +A
Sbjct: 228 VVCEASDMHSLLGLVASGIGVSLVPA-SLVNIQTANVIYVPLSDDVQSSTLSLAWNPEA 285
>UniRef50_A6UBA0 Cluster: Transcriptional regulator, LysR family;
n=2; cellular organisms|Rep: Transcriptional regulator,
LysR family - Sinorhizobium medicae WSM419
Length = 306
Score = 42.3 bits (95), Expect = 0.012
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDR--TTAGRQA 546
I+ PL+ + F + R HPLA+++ + L+N+ L T +R T A ++A
Sbjct: 160 IETIPLMEDVFNVMVSRTHPLAEQSTVML---HQLRNERWALDTASSTYNRMITDACQEA 216
Query: 545 -LEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYS-SIIGIPLVEPVIRRTLGII 372
+V R ++ L+ G GIS LPGL A Y + + +EP IRR + +
Sbjct: 217 GFTPNIVARCKGFEVTIALIRQGYGISILPGL---RASYDLEDVWVCKLEPEIRRKISLA 273
Query: 371 RRK 363
RK
Sbjct: 274 FRK 276
>UniRef50_Q92AS3 Cluster: Transcription activator of glutamate
synthase operon GltC; n=12; Listeria|Rep: Transcription
activator of glutamate synthase operon GltC - Listeria
innocua
Length = 295
Score = 41.9 bits (94), Expect = 0.015
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 560 AGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTL 381
A ++ E + +S T GLV AGLGIS LP + + A + I L + +RR++
Sbjct: 209 ANKKGFEPQIAFQSRDFYTIQGLVGAGLGISILPEMILDGAIFKETKSIALRDKELRRSV 268
Query: 380 GIIRRK 363
GII K
Sbjct: 269 GIITTK 274
>UniRef50_Q1GLW4 Cluster: Transcriptional regulator LysR family;
n=3; Rhodobacteraceae|Rep: Transcriptional regulator
LysR family - Silicibacter sp. (strain TM1040)
Length = 301
Score = 41.9 bits (94), Expect = 0.015
Identities = 21/70 (30%), Positives = 42/70 (60%)
Frame = -1
Query: 566 TTAGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRR 387
+ A AL +L + + ++ LG+V+A +GI+ LP +A+ + + ++ PL EP +R
Sbjct: 203 SAAASVALHDRAMLSAHNLTSILGMVQANIGITILPEMAVRASNSAGLVFRPLTEPHAKR 262
Query: 386 TLGIIRRKDA 357
+ ++RR D+
Sbjct: 263 EIHMLRRADS 272
>UniRef50_A7DHN9 Cluster: Transcriptional regulator, LysR family;
n=3; Alphaproteobacteria|Rep: Transcriptional regulator,
LysR family - Methylobacterium extorquens PA1
Length = 323
Score = 41.9 bits (94), Expect = 0.015
Identities = 31/95 (32%), Positives = 43/95 (45%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+ +PL EPF L C DH A+ A R ++G D L + D+T A L
Sbjct: 161 LTISPLFVEPFRLACPVDHAFAQGAPPRAENLNG--PDLLLLDEGNCLRDQTIAACGTLR 218
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAP 435
G + S T +V AG G + +P LA+P P
Sbjct: 219 -GAGRHATSLETLRSMVAAGAGYTLIPALAIPSGP 252
>UniRef50_A3JD31 Cluster: Transcriptional regulator, LysR family
protein; n=1; Marinobacter sp. ELB17|Rep:
Transcriptional regulator, LysR family protein -
Marinobacter sp. ELB17
Length = 294
Score = 41.9 bits (94), Expect = 0.015
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAAC---RMAGVSGLQNDWRTLLQRQPTVDRTTAGRQ 549
+ + L + + CRRDH LA+ R+ G + N LL TA +
Sbjct: 158 LHYRHLFEDKIGVVCRRDHALAQHKTLDWQRLRGEKLIGNGTSRLLM-------NTAAAE 210
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
+E S S L ++EAG G++ LP LA P +S+ IPL P + R +G+++
Sbjct: 211 LVENSAFYISNMISL-LAMLEAGAGVTTLPRLAFPEQS-ASLCFIPLDNPDVVRRIGLVK 268
>UniRef50_UPI0000DAE53B Cluster: hypothetical protein
Rgryl_01000580; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000580 - Rickettsiella
grylli
Length = 310
Score = 41.5 bits (93), Expect = 0.020
Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPL--AKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
PL EPF L R H L AKK G L R +D R L+
Sbjct: 159 PLFKEPFFLIMPRSHALYDAKKLDLNDLGHYNLLLLEEGHCFRDQALD-VCHKRSNLKEK 217
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
R+ S T +V G GI+ LP LA+ P+ I +PL PV R +G++ RK
Sbjct: 218 TNYRATSLETLRHMVGTGAGITLLPLLALETHPF--IKNVPLASPVPERKIGMLWRK 272
>UniRef50_Q5X4A2 Cluster: Hydrogen peroxide-inducible genes
activator; n=4; Legionella pneumophila|Rep: Hydrogen
peroxide-inducible genes activator - Legionella
pneumophila (strain Paris)
Length = 296
Score = 41.5 bits (93), Expect = 0.020
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTV-DRTTAGRQALEAGLV 528
L E F C HPLA+ + ++ L+N LL+ + ++ A Q +A +
Sbjct: 159 LYEEKFYFACANTHPLAQ---AKSVNINDLKNQPIMLLEEGHCLREQAMAVCQLAKADDI 215
Query: 527 LR-SASSSTSLGL-VEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
+A+S +L L V+AG+G++ LP L+ A + + IP EP R LG+ R
Sbjct: 216 ADFTATSLETLRLMVQAGMGVTLLPALSTLTASTNHLKCIPFSEPAPSRILGLFWR 271
>UniRef50_A0TGX1 Cluster: Transcriptional regulator, LysR family;
n=6; Burkholderia cepacia complex|Rep: Transcriptional
regulator, LysR family - Burkholderia ambifaria MC40-6
Length = 327
Score = 41.5 bits (93), Expect = 0.020
Identities = 30/123 (24%), Positives = 51/123 (41%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
F PL + +VL D PLA+ A + + + + G++A+
Sbjct: 191 FEPLFTDRYVLAVHEDDPLARADAITLGELRHAKLIIGGRDSGNRLLLEMLMGQEAVRTR 250
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAG 354
S LV AG+G + LP A+ ++ +P+ P I RT+GI+R +
Sbjct: 251 WFYEVEHISCVAALVAAGVGCAILPESALRAYGSPAVRTVPIASPTIDRTVGIVRHRTIS 310
Query: 353 AAS 345
+S
Sbjct: 311 MSS 313
>UniRef50_P52677 Cluster: Probable hydrogen peroxide-inducible genes
activator; n=7; Mycobacterium|Rep: Probable hydrogen
peroxide-inducible genes activator - Mycobacterium avium
Length = 311
Score = 41.5 bits (93), Expect = 0.020
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKA---ACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEA 537
P+ +E FVL HPLA K A +A + L D L+ Q AG +A A
Sbjct: 166 PIYDEDFVLALPPGHPLAGKRRVPATALADLPLLLLDEGHCLRDQALDVCHKAGVRAELA 225
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGI-PLVEPVIRRTLGIIRRKD 360
R+AS +T++ V GLG++ +P A+P S +G+ P R +G++ R
Sbjct: 226 NT--RAASLATAVQCVTGGLGVTLIPQSAVPVEASRSRLGLAQFAAPRPGRRIGLVFRSS 283
Query: 359 AGAASGFK 336
+G ++
Sbjct: 284 SGRDDSYR 291
>UniRef50_Q7W1I2 Cluster: Putative LysR-family transcriptional
regulator; n=2; Bordetella|Rep: Putative LysR-family
transcriptional regulator - Bordetella parapertussis
Length = 316
Score = 41.1 bits (92), Expect = 0.027
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = -1
Query: 569 RTTAGRQALEAGLVLRSASS----STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVE 402
R + R A +AG+ L+ A +T+L + +GLG++ +P + H Y++++ LV
Sbjct: 221 RRSIERAAQQAGVELQVAFEVSLLTTALAMAASGLGVAVVPQSILAHTHYTNLVARRLVR 280
Query: 401 PVIRRTLGIIRRKDAGAAS 345
PV+ R+ ++ K+A A S
Sbjct: 281 PVVLRSTSVV-FKEARALS 298
>UniRef50_Q0M3Y7 Cluster: Regulatory protein, LysR:LysR,
substrate-binding precursor; n=1; Caulobacter sp.
K31|Rep: Regulatory protein, LysR:LysR,
substrate-binding precursor - Caulobacter sp. K31
Length = 294
Score = 41.1 bits (92), Expect = 0.027
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
++ T L ++ + R+HP+A+ + V L + L+ R +V G L
Sbjct: 157 LELTRLFDDTLQVVHPREHPIAQAP---VIDVETLSHYPLILMNRGSSVRDLVEGA-FLA 212
Query: 539 AGLVLRSASS----STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
AG A ST++ LV AGLG+S LP A+ + + +P RTL ++
Sbjct: 213 AGRTATPACEVTYMSTAVALVRAGLGLSILPSTAVELRSQPDVAARSIDDPAFVRTLVLV 272
Query: 371 RRKDA 357
RR++A
Sbjct: 273 RRRNA 277
>UniRef50_A5WEU8 Cluster: Transcriptional regulator, LysR family;
n=15; Gammaproteobacteria|Rep: Transcriptional
regulator, LysR family - Psychrobacter sp. PRwf-1
Length = 293
Score = 41.1 bits (92), Expect = 0.027
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLA--KKAAC--RMAGVSGLQNDWRTLLQRQPTVDRTTAGR 552
+ F PL+ +P + C ++H LA K+ + G + N LL P + R
Sbjct: 157 VTFMPLLADPIGVVCTKNHRLAQFKEGVVWQELLGEPFIYNGTCQLLSHTPAYEINIKPR 216
Query: 551 QALEAGLVLRSASSSTSL-GLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
E G + TSL L+ LG++ LP LA P + ++ IPL++P+++R +G+
Sbjct: 217 Y--EVGNI-------TSLFSLLRNELGVTTLPKLAFPEYD-NHLVWIPLIDPIVKRQIGM 266
>UniRef50_A4WD78 Cluster: Transcriptional regulator, LysR family;
n=7; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Enterobacter sp. 638
Length = 314
Score = 41.1 bits (92), Expect = 0.027
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = -1
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAGA 351
V++ S +V AGLG S +P +A+ HA + + ++P++ R LGI+ R+D
Sbjct: 237 VMQLGSIEAIKRMVRAGLGFSIVPRMAVQHAADREGLTVGSLDPILHRQLGIVMRQDKIL 296
Query: 350 ASG 342
+ G
Sbjct: 297 SKG 299
>UniRef50_A4EDZ3 Cluster: Transcriptional regulatory protein; n=1;
Roseobacter sp. CCS2|Rep: Transcriptional regulatory
protein - Roseobacter sp. CCS2
Length = 300
Score = 41.1 bits (92), Expect = 0.027
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -1
Query: 554 RQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
R+ L + ++ T+L AGLG++ LP +A+ A + +P EP R++GI
Sbjct: 212 RKNLSLNVAYELQNAFTALSFASAGLGVAMLPSIAIEMAEFDGFRVVPFREPEAARSVGI 271
Query: 374 IRRK 363
I K
Sbjct: 272 IAEK 275
>UniRef50_A4A3P1 Cluster: Transcriptional regulator, LysR family
protein; n=3; Proteobacteria|Rep: Transcriptional
regulator, LysR family protein - Congregibacter
litoralis KT71
Length = 301
Score = 40.7 bits (91), Expect = 0.035
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSG----LQNDWRTLLQRQPTVDRTTAGRQALEA 537
L ++PF L DHPLA K+ + G L D L + GR E
Sbjct: 164 LFDDPFFLASPVDHPLAAKSDLDTGDLQGQELLLLEDGHCLRDHALEACKLR-GR---EY 219
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSS--IIGIPLVEPVIRRTLGIIRRK 363
+ ++ S +T + +V +G+G++ +PG+A+ ++ + P +P ++R +G++ RK
Sbjct: 220 TVPYQATSLTTVVQMVASGIGVTLVPGMAVTAGALATADVTVTPFADPSVKRDIGLMWRK 279
Query: 362 DAGAASGFK 336
+ F+
Sbjct: 280 KTPRQTEFR 288
>UniRef50_A0HD23 Cluster: Transcriptional regulator, LysR family
precursor; n=3; Burkholderiales|Rep: Transcriptional
regulator, LysR family precursor - Comamonas
testosteroni KF-1
Length = 310
Score = 40.7 bits (91), Expect = 0.035
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTT-AGRQA--LEAG 534
++ EPF L C H LA+K A ++G ++ LL R A QA A
Sbjct: 162 ILAEPFCLVCLSSHDLARKKEVHWARLAG---EYLVLLDHASGSRRLIDAALQAHGAAAS 218
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHA 438
+V ++T +V+ GLG+S +P LA+P A
Sbjct: 219 VVQEVGHTTTIYSMVQQGLGLSVVPRLAIPSA 250
>UniRef50_A0HC66 Cluster: Transcriptional regulator, LysR family;
n=1; Comamonas testosteroni KF-1|Rep: Transcriptional
regulator, LysR family - Comamonas testosteroni KF-1
Length = 396
Score = 40.7 bits (91), Expect = 0.035
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -1
Query: 695 EPFVLPCRRDHPLAKKAACRMAGVSGLQN-DWRTLLQRQPTVDRTTAGRQALEAGLVLRS 519
E L C HPLA K S + R++ + T+DR Q LE +++
Sbjct: 256 ELLCLACTPSHPLAAKKRITWGEASDYPHITLRSVYSTRKTIDRILKA-QGLELRSTIQA 314
Query: 518 ASSSTSLGLVEAGLGISALPGLAMPHA 438
+ +TSL LV+A LG++ +P A A
Sbjct: 315 GTLATSLRLVKANLGVTLIPSYAREFA 341
>UniRef50_Q9RD21 Cluster: Putative LysR-family transcriptional
regulatory protein; n=1; Streptomyces coelicolor|Rep:
Putative LysR-family transcriptional regulatory protein
- Streptomyces coelicolor
Length = 301
Score = 40.3 bits (90), Expect = 0.047
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTA--GRQALEAG 534
PL++EPF L DHPLA +A +A V+ W L + P A G
Sbjct: 165 PLLDEPFDLVVPVDHPLAGRAEADLADVA--HEAWIAPLPQSPCRTHMVAACGAAGFTPD 222
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR---RK 363
+V + + + LV GLG++ +P LA P I+ +P R+ L R +
Sbjct: 223 VVHLAVDWNVTAHLVAHGLGVALVPRLAR-LTPELPIVRVPCAGRPHRKLLTCTRSGGHR 281
Query: 362 DAGAASGFKRETSTTNGAVA 303
A A+ + + AVA
Sbjct: 282 RAAVAAALEELRALAAAAVA 301
>UniRef50_Q8NLL4 Cluster: Transcriptional regulator; n=3;
Corynebacterium|Rep: Transcriptional regulator -
Corynebacterium glutamicum (Brevibacterium flavum)
Length = 308
Score = 40.3 bits (90), Expect = 0.047
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = -1
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAG 354
+V S +T GLV AGLG+ +P + P+ P I+ PL P R LG++ R +AG
Sbjct: 229 VVFESMELTTVAGLVSAGLGVGVVP-MDDPYLPTVGIVQRPLSPPAYRE-LGLVWRLNAG 286
Query: 353 AA 348
A
Sbjct: 287 PA 288
>UniRef50_Q7WC66 Cluster: LysR-family transcriptional regulator;
n=3; Bordetella|Rep: LysR-family transcriptional
regulator - Bordetella parapertussis
Length = 320
Score = 40.3 bits (90), Expect = 0.047
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -1
Query: 563 TAGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRT 384
TA + L + + + T + + AGLG + LP + +P P+ + +P+ P + R
Sbjct: 217 TARSRGLTINTKFQFSQAQTLISMATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRD 276
Query: 383 LGIIR 369
+ I+R
Sbjct: 277 VAIVR 281
>UniRef50_Q2J7C4 Cluster: Transcriptional regulator, LysR family;
n=9; Actinomycetales|Rep: Transcriptional regulator,
LysR family - Frankia sp. (strain CcI3)
Length = 316
Score = 40.3 bits (90), Expect = 0.047
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTT--AGRQA-LE 540
+PL+ E VL D P A R V+ L+N + +R + T A R+A E
Sbjct: 160 SPLIRESLVLVSSLDEPPI--VAGRPLTVADLRNHPMVMFRRGYDLREATVTACREAGFE 217
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
+ LG V AGLG + +P + H + P V P ++RT+G+ RR+D
Sbjct: 218 PIFAIEGGEMDAVLGFVAAGLGSAVIPS-TVAHRLGMRVT--PFVLPGLQRTIGLARRRD 274
>UniRef50_Q3W213 Cluster: Regulatory protein, LysR:LysR substrate
binding domain; n=1; Frankia sp. EAN1pec|Rep: Regulatory
protein, LysR:LysR substrate binding domain - Frankia
sp. EAN1pec
Length = 333
Score = 40.3 bits (90), Expect = 0.047
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSG----LQNDWRTLLQRQPTVDRTTAGRQALE 540
PL +E FVL DHP+A AA ++ + G L D + V R R+
Sbjct: 164 PLYDEDFVLVTPVDHPMAGSAALPVSSLCGRDLLLLEDGHCFRAQALDVCREAGARER-- 221
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAM 447
LR+AS ST + +V GLG++ +P A+
Sbjct: 222 --SALRAASLSTIVQMVAGGLGLTLIPAAAV 250
>UniRef50_A3VR86 Cluster: Transcriptional regulator, LysR family
protein; n=2; cellular organisms|Rep: Transcriptional
regulator, LysR family protein - Parvularcula
bermudensis HTCC2503
Length = 302
Score = 40.3 bits (90), Expect = 0.047
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Frame = -1
Query: 695 EPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTA----GRQALEAGLV 528
+PF+ C +DHPLA + +S D R LL R A ++ +
Sbjct: 164 DPFLFACAQDHPLAGRKTLSPQELS----DQRLLLLEDGHCLRDHALDACELRSRDTVDT 219
Query: 527 LRSASSSTSLGLVEAGLGISALPGLAMPH--APYSSIIGIPLVE---PVIRRTLGIIRRK 363
+ S T +V GLG + LP +A+ H A +S + +P+VE V R LG+ R+
Sbjct: 220 FGATSLFTLTQMVAGGLGTTLLPKIAVDHGLAAFSGLAAVPIVEAAGTVPSRDLGLAWRR 279
Query: 362 DAG 354
++G
Sbjct: 280 NSG 282
>UniRef50_P20668 Cluster: HTH-type transcriptional regulator gltC;
n=8; Bacillaceae|Rep: HTH-type transcriptional regulator
gltC - Bacillus subtilis
Length = 300
Score = 40.3 bits (90), Expect = 0.047
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Frame = -1
Query: 668 DHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVLRSASSSTSL--- 498
+HPLAK+ + L+ND + +L + V R A +AG ++ L
Sbjct: 173 NHPLAKQKTVHLID---LRND-QFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAI 228
Query: 497 -GLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
GLV AG+G++ LP + IP+ P ++RT+GII+ K+
Sbjct: 229 KGLVSAGMGVTLLPESTFAETTPRFTVKIPIEFPQVKRTVGIIKPKN 275
>UniRef50_Q7VYV1 Cluster: LysR-family transcriptional regulator;
n=4; Bordetella|Rep: LysR-family transcriptional
regulator - Bordetella pertussis
Length = 320
Score = 39.9 bits (89), Expect = 0.062
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 545 LEAGLVLRSASSSTS-LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
+EA ASS+TS LV+AGLG++ LP LA+ + L P + RTL II
Sbjct: 222 IEAAAPFYEASSTTSQAALVKAGLGVALLPALAVERVREPGLAFALLARPTVMRTLCIIG 281
Query: 368 RKD 360
++
Sbjct: 282 HQE 284
>UniRef50_Q4ZT12 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=2; Pseudomonas|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Pseudomonas
syringae pv. syringae (strain B728a)
Length = 313
Score = 39.9 bits (89), Expect = 0.062
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRM--AGVSGLQNDWRTLLQRQPTVDRTTAGRQ- 549
++F ++ + L DHPLAK+ A R+ V + R R V+R A Q
Sbjct: 173 LEFNAILEDRLCLFAPEDHPLAKRCAVRLNEIAVFPIVLTGRESSVRD-LVERVFADEQL 231
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
L AG L + ST L LV G GI+ LP A + +P+ P + R +G+I
Sbjct: 232 PLSAG--LEANYMSTVLALVRQGQGITLLPESA--DDGRGDLSKVPVDHPGVVRQIGLIT 287
Query: 368 RKD 360
R +
Sbjct: 288 RSE 290
>UniRef50_Q2S7W9 Cluster: Transcriptional regulator; n=1; Hahella
chejuensis KCTC 2396|Rep: Transcriptional regulator -
Hahella chejuensis (strain KCTC 2396)
Length = 278
Score = 39.9 bits (89), Expect = 0.062
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
F+PL + + L DHPL+ + ++ ++G+ R+ R A R L+
Sbjct: 145 FSPLWRDEYSLLLPADHPLSLRDQLEISDLNGISLVERSFCDLSGQW-RAFAERHQLDFT 203
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVE----PVIRRTLGI 375
+ R+ + +L LV AG+G P AP +I IPL + P I+R LG+
Sbjct: 204 ITARTDNEEWALALVAAGVGACLAPQGIDAAAP-DGVIAIPLSQIEGFPDIKRELGL 259
>UniRef50_A3TNT5 Cluster: Putative LysR-family transcriptional
regulator; n=1; Janibacter sp. HTCC2649|Rep: Putative
LysR-family transcriptional regulator - Janibacter sp.
HTCC2649
Length = 303
Score = 39.9 bits (89), Expect = 0.062
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSG---LQNDWRTLLQRQPTVDRTTAGRQALEA 537
PL +PFV H LAK R+A + G + ND+ L + V A
Sbjct: 158 PLSTDPFVAVVPSTHELAKSRTVRLADLRGETWVSNDFIGSLCHRIVVSACAAA--GFTP 215
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPV-IRRTLGIIR 369
+++ +++ V AG+GIS +P LA P S + + + +P IR ++R
Sbjct: 216 RFTVQAQEHHSAIQFVAAGVGISVMPRLAARALP-SEVTRLRITDPTPIREISALVR 271
>UniRef50_Q83PD6 Cluster: Cation-efflux pump fieF; n=70;
Gammaproteobacteria|Rep: Cation-efflux pump fieF -
Shigella flexneri
Length = 300
Score = 39.9 bits (89), Expect = 0.062
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -2
Query: 85 MNQSYGRLVSRAAIAATAM 29
MNQSYGRLVSRAAIAATAM
Sbjct: 1 MNQSYGRLVSRAAIAATAM 19
>UniRef50_Q89XA4 Cluster: Transcriptional regulatory protein; n=2;
Bradyrhizobium|Rep: Transcriptional regulatory protein -
Bradyrhizobium japonicum
Length = 297
Score = 39.5 bits (88), Expect = 0.082
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = -1
Query: 509 STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
+T+L + GLG++ LP +P + ++I PL+ P I R + +++R+
Sbjct: 227 NTALAMTAQGLGLAILPATMLPADQFPTLIARPLIRPAITRPVSLLQRQ 275
>UniRef50_Q826F8 Cluster: Putative LysR-family transcriptional
regulator; n=1; Streptomyces avermitilis|Rep: Putative
LysR-family transcriptional regulator - Streptomyces
avermitilis
Length = 296
Score = 39.5 bits (88), Expect = 0.082
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQ-NDWRTLLQRQPTVDRTTAGRQAL 543
ID L P VL DHPLA++ +A ++ D+ + VDR AG +
Sbjct: 158 IDARELATVPLVLVVSADHPLAQRGEVALADLAAEPFVDFPPGYGNREVVDRAFAGAGVV 217
Query: 542 EAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGI 414
+ L LV GLGI+ LP A+ P ++ +
Sbjct: 218 RR-VALEVPDIDMGAALVRHGLGIAFLPAFAVARTPGLHVLDV 259
>UniRef50_Q4J414 Cluster: Regulatory protein, LysR:LysR substrate
binding domain; n=1; Azotobacter vinelandii AvOP|Rep:
Regulatory protein, LysR:LysR substrate binding domain -
Azotobacter vinelandii AvOP
Length = 299
Score = 39.5 bits (88), Expect = 0.082
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Frame = -1
Query: 638 RMAGVSGLQNDWRTLLQRQPTVD---RTTAGRQALEAGLVLRSA----SSSTSLGLVEAG 480
R G S + W+TL T D R A G+ + A ST+ LV G
Sbjct: 174 RQEGASKEPDTWKTLPYIALTADTSIRPLADEALRHLGVTTQPAWEVAHMSTAAALVREG 233
Query: 479 LGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAGAASGFKRETSTTN 315
+G S LP + + + +E RR+LG+++RK G K S N
Sbjct: 234 IGFSLLPASCTTFLHIGADLSVLPIEQPTRRSLGLLQRKPIGQTPSMKAFLSHLN 288
>UniRef50_A6GDN8 Cluster: Transcriptional regulator; n=1;
Plesiocystis pacifica SIR-1|Rep: Transcriptional
regulator - Plesiocystis pacifica SIR-1
Length = 318
Score = 39.5 bits (88), Expect = 0.082
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG--- 534
LV EPFVL + HPLA + A ++G +L + R A AG
Sbjct: 163 LVVEPFVLVAPKGHPLATRGALEPEEITGAS----LILMQDGHCLRDQAIEVCALAGPPP 218
Query: 533 -LVLRSASSSTSLGLVEAGLGISALPGLAMP 444
+ +AS ST + +VE+GLG + LP A+P
Sbjct: 219 PTSVAAASVSTLVRMVESGLGATLLPASALP 249
>UniRef50_Q7WCW0 Cluster: Probable LysR-family transcriptional
regulator; n=3; Bordetella|Rep: Probable LysR-family
transcriptional regulator - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 305
Score = 39.1 bits (87), Expect = 0.11
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVS-------GLQNDWRTLLQRQPTVDRTT 561
++F L ++ V +DHPLA++ R + ++ Q+ R L+ + +
Sbjct: 159 LEFDLLAHDELVAVVPQDHPLARRTLVRWSELAESPLIGMSYQSHVRMLVDEAFAANGIS 218
Query: 560 AGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTL 381
R E L+ +T++G+V AGLG+S LP A+ + + + L P +RR L
Sbjct: 219 K-RPKREVSLI------TTAIGMVRAGLGVSVLPTTAIEVCNVAGLKVLRLHAPRVRRPL 271
Query: 380 GII 372
G +
Sbjct: 272 GFL 274
>UniRef50_Q39HG1 Cluster: Transcriptional regulator, LysR family;
n=13; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 298
Score = 39.1 bits (87), Expect = 0.11
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Frame = -1
Query: 686 VLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG----LVLRS 519
V C +DHPLA+K A V+ + +L + T R+ AG +
Sbjct: 168 VAVCPKDHPLARKRRVTTADVAAVP----LVLTARGTSVRSVVDAALDAAGCTPDIACEP 223
Query: 518 ASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
T++ +V GLG++ LP A ++ +P+ +P R + ++ ++
Sbjct: 224 TYMMTAVAMVRGGLGVTILPATAREVRAEPELVAMPIDDPAFVRPIALVTKR 275
>UniRef50_Q1NI31 Cluster: Transcriptional regulator, LysR family
protein; n=1; Sphingomonas sp. SKA58|Rep:
Transcriptional regulator, LysR family protein -
Sphingomonas sp. SKA58
Length = 291
Score = 39.1 bits (87), Expect = 0.11
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVL 525
L E + L DHPLA AA V+ + R + P V R R+ +
Sbjct: 156 LFEEGYALAMAADHPLAGHAALEAEQVASAEMIVRRNCEALPHVSRFFT-RRGVRPFFSA 214
Query: 524 RSASSSTSLGLVEAGLGISALP------GLAMP 444
R+A + ++ ++AGLGI+ +P G+AMP
Sbjct: 215 RTADDARAVAFIKAGLGITVMPCCFAQAGMAMP 247
>UniRef50_A4FN23 Cluster: LysR-family transcriptional regulator;
n=1; Saccharopolyspora erythraea NRRL 2338|Rep:
LysR-family transcriptional regulator -
Saccharopolyspora erythraea (strain NRRL 23338)
Length = 305
Score = 39.1 bits (87), Expect = 0.11
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDW----RTLLQRQPTVDRTTAGR 552
+ PL+++P DH LA A R+A + W RTL R+ + T A
Sbjct: 161 VRLAPLIDDPVHAVLPTDHRLADHPAVRLADFA--DEPWAAAPRTLPNRRQLEEATRA-- 216
Query: 551 QALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
Q + S S + + +V AG+ ++ +P LA+ + S + PL EP + R + +
Sbjct: 217 QGFLPNVPFESESYAVAEAVVSAGVAVAFIPRLAI--SGTSGTVHRPLAEPGLFRRIHAV 274
Query: 371 RRKDAGAA 348
AG A
Sbjct: 275 VPASAGHA 282
>UniRef50_A3RU99 Cluster: Transcriptional regulators, LysR family;
n=1; Ralstonia solanacearum UW551|Rep: Transcriptional
regulators, LysR family - Ralstonia solanacearum UW551
Length = 295
Score = 39.1 bits (87), Expect = 0.11
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Frame = -1
Query: 716 DFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEA 537
D PLV + FV HPLA K A +A VS + TL + R + L
Sbjct: 155 DTVPLVEDQFVALIPAAHPLAAKKAVSLADVSAMP-FIMTLAGSASAIQRLFE-QARLHP 212
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGI---PLVEPVIRRTLGI 375
+ R A T + +VE G G S + LA P + G+ PL P ++R++G+
Sbjct: 213 AVKQRYAQIITIIKMVENGSGFSIVADLAAPDQIMALCPGVTKKPLA-PRVKRSVGL 268
>UniRef50_Q7NSP2 Cluster: Hydrogen peroxide-inducible genes
activator; n=25; Proteobacteria|Rep: Hydrogen
peroxide-inducible genes activator - Chromobacterium
violaceum
Length = 312
Score = 38.7 bits (86), Expect = 0.14
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAA---CRMAGVSGLQNDWRTLLQRQ--PTVDRTTAG 555
I+ PL +EPFV+ + HP K+ A C++A S L + Q T +A
Sbjct: 155 IEAWPLYDEPFVVATPKGHPWEKQQAIQPCQLAEESVLLLTQGNCFRDQVLQTCSELSAR 214
Query: 554 R-QALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLG 378
+ L+ +S +T +V +G+G++ +P ++ S + +P P +R +
Sbjct: 215 QNHGNNLASALQGSSLNTIRHMVASGMGVTVMPATSVGSGDESLLSIVPFDSPAPQRRVL 274
Query: 377 IIRRK 363
++ RK
Sbjct: 275 LVTRK 279
>UniRef50_Q21B31 Cluster: Transcriptional regulator, LysR family;
n=2; Alphaproteobacteria|Rep: Transcriptional regulator,
LysR family - Rhodopseudomonas palustris (strain BisB18)
Length = 364
Score = 38.7 bits (86), Expect = 0.14
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -1
Query: 554 RQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
R+ E +V+ + ST+L + AG+G++ LP A+ + + P+ P R +GI
Sbjct: 215 REGCELNIVMETNYMSTALSMARAGVGVAILPSTAVEAGNMAGLSFKPIDPPHFNRRVGI 274
Query: 374 IRRKD 360
I + D
Sbjct: 275 ICKAD 279
>UniRef50_Q12EW2 Cluster: Transcriptional regulator, LysR family
precursor; n=1; Polaromonas sp. JS666|Rep:
Transcriptional regulator, LysR family precursor -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 309
Score = 38.7 bits (86), Expect = 0.14
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Frame = -1
Query: 572 DRTTAGRQALEAGLVLRSASSS----TSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLV 405
D T AG A AGL+L+ A + + +G+V+AGLG++ LPG A+ + I +
Sbjct: 204 DLTEAGFAA--AGLILKPAREANYAGSLIGMVDAGLGVAILPGYAVKLTDPARIGWHRVE 261
Query: 404 EPVIRRTLGIIRRKDAG---AASGF 339
P+I R + +++R AA GF
Sbjct: 262 NPLIDREVSLVQRAGVSLSPAAQGF 286
>UniRef50_A3K4Q2 Cluster: Probable LysR-family transcriptional
regulator; n=1; Sagittula stellata E-37|Rep: Probable
LysR-family transcriptional regulator - Sagittula
stellata E-37
Length = 292
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -1
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLA-MPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
AG + + T++GLV GLG+S L LA P A I PL+ PV+ R + I+RR
Sbjct: 216 AGSAIECSFVPTTIGLVRNGLGVSVLSELACRPFARDERITLRPLL-PVVERPISILRRG 274
Query: 362 D 360
D
Sbjct: 275 D 275
>UniRef50_A0G459 Cluster: Transcriptional regulator, LysR family;
n=3; Burkholderia|Rep: Transcriptional regulator, LysR
family - Burkholderia phymatum STM815
Length = 340
Score = 38.7 bits (86), Expect = 0.14
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWR--TLLQRQPT--VDRTTAGRQALE 540
PLV+ P HPLA AA + + + TL T V R ++
Sbjct: 163 PLVSTPLCAVLPHAHPLASGAALHWEALRNSRTVTQLVTLNAEAGTRNVTERALNRHRID 222
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPY--SSIIGIPLVEPVIRRTLGIIRR 366
A + +L ++E GLGI LP PHA ++++ +PLV P + T ++RR
Sbjct: 223 AARANECGHLAAALRMIELGLGIGVLP--VDPHAAALPAALVALPLV-PEVSVTTMLVRR 279
Query: 365 KD 360
++
Sbjct: 280 RN 281
>UniRef50_Q7WMW6 Cluster: Putative LysR-family transcriptional
regulator; n=3; Bordetella|Rep: Putative LysR-family
transcriptional regulator - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 303
Score = 38.3 bits (85), Expect = 0.19
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQ--NDWRTLLQRQPTVDRTTAGRQALEAGL 531
L + F+L DHPLA+++ R+A + G + R + + G + +
Sbjct: 161 LEQDHFILAVPADHPLAQQSCARLADLDGQRFIAFSREKVPAMHAIISLAFGEAGVTPKV 220
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAGA 351
V + T++ L E+G+G++ +P A + + + +P+V+ +GI DA
Sbjct: 221 VQQIVQVPTAIALAESGIGMALVPSAAARYLRTGARL-LPVVDLPASLRIGIALGYDALT 279
Query: 350 AS 345
AS
Sbjct: 280 AS 281
>UniRef50_A6WFE7 Cluster: Transcriptional regulator, LysR family;
n=1; Kineococcus radiotolerans SRS30216|Rep:
Transcriptional regulator, LysR family - Kineococcus
radiotolerans SRS30216
Length = 313
Score = 38.3 bits (85), Expect = 0.19
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLV 528
P +P ++ HPLA +A +A + T+L PT R R AG+
Sbjct: 174 PAGRDPLLVVLPGTHPLAGRARVPLAALEDA-----TVLAGCPTC-RARWERHCARAGVR 227
Query: 527 LRSASSSTS-----LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
R T +V AG G + LPGLA+ ++ +PL +P + R L ++ R
Sbjct: 228 TRLHHQVTDDHVLMQAMVAAGQGAAVLPGLALSAHRRPDVVALPL-DPPLGRDLTVLVRG 286
Query: 362 DAGAA 348
D AA
Sbjct: 287 DTPAA 291
>UniRef50_A1HAX4 Cluster: Putative uncharacterized protein; n=1;
Ralstonia pickettii 12J|Rep: Putative uncharacterized
protein - Ralstonia pickettii 12J
Length = 197
Score = 38.3 bits (85), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACR 636
PL N+P+VL CR DHPLAK+ R
Sbjct: 174 PLTNDPYVLVCRDDHPLAKRRRIR 197
>UniRef50_A5NZG7 Cluster: Transcriptional regulator, LysR family;
n=1; Methylobacterium sp. 4-46|Rep: Transcriptional
regulator, LysR family - Methylobacterium sp. 4-46
Length = 313
Score = 37.9 bits (84), Expect = 0.25
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQA-LEAGL 531
PL EPF+L C DH A + A ++G D L + D+T A A AG
Sbjct: 165 PLFREPFLLACPADHAFAAGDPPKAADLAG--PDLLLLDEGNCLRDQTVAACGAGPSAG- 221
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAP 435
+ S T +V AG G + LP LA P P
Sbjct: 222 -RHATSLETLRSMVAAGGGYTLLPALAAPSGP 252
>UniRef50_A4FAR0 Cluster: Transcriptional regulator; n=2;
Actinomycetales|Rep: Transcriptional regulator -
Saccharopolyspora erythraea (strain NRRL 23338)
Length = 307
Score = 37.9 bits (84), Expect = 0.25
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -1
Query: 494 LVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAG---AASGFKRETS 324
L+ +GLG+ LP A AP++ + + L P RTL + R+DA AA F+ +
Sbjct: 227 LISSGLGVGLLPATARRFAPHAPLAWLHLDAPDCHRTLTFVWRRDAYVSLAAQEFRAHVT 286
Query: 323 TTNGAVA*RDAMAKK 279
T A D A++
Sbjct: 287 ATVRRAAAGDEQAEQ 301
>UniRef50_A4YNR9 Cluster: Transcriptional regulator of oxidative
stress, regulates intracellular hydrogen peroxide; n=22;
Alphaproteobacteria|Rep: Transcriptional regulator of
oxidative stress, regulates intracellular hydrogen
peroxide - Bradyrhizobium sp. (strain ORS278)
Length = 309
Score = 37.5 bits (83), Expect = 0.33
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = -1
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIP-LVEPVIRRTLGIIRRKDAG 354
+L ++S ST + +V AG+G++ +P +A+ S+ + + EP +RT+G++ RK +
Sbjct: 217 MLDASSLSTLVQMVGAGMGVTLIPEMAVAVETRSASVSLARFAEPQPQRTIGMVWRKTSP 276
Query: 353 AASGFKRETSTTNGA 309
A + + GA
Sbjct: 277 LAKQLMQISEIVGGA 291
>UniRef50_A3K7Z5 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Sagittula stellata E-37|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Sagittula stellata E-37
Length = 333
Score = 37.5 bits (83), Expect = 0.33
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDR-------TT 561
I+ L+ EPFV+ + HPLAK+ V + L++ P+V+R +
Sbjct: 183 IETHTLLEEPFVVVVSKKHPLAKQTILTADQVLS-----QPLIRVIPSVNRDYSHQMFSV 237
Query: 560 AGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTL 381
+ +V + + T LGLV AG+GIS +P ++ + IPL E T+
Sbjct: 238 LANRNTTPNIVHEVSDTHTLLGLVAAGMGISMVPA-SVRSIHTDQLRYIPLREGTPTSTI 296
Query: 380 GIIRRKDAGAAS 345
+ KD+ + S
Sbjct: 297 QLAWLKDSDSTS 308
>UniRef50_A3JT72 Cluster: Transcriptional regulator, LysR family
protein; n=3; Alphaproteobacteria|Rep: Transcriptional
regulator, LysR family protein - Rhodobacterales
bacterium HTCC2150
Length = 301
Score = 37.5 bits (83), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -1
Query: 515 SSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDA 357
SS T + +V GLG+S +P L +P Y+++ I L R LG+I R+ A
Sbjct: 219 SSETVISMVAHGLGVSIVPDLCLPDPIYANLRKISLGPKSGARVLGLIARQGA 271
>UniRef50_Q9K3X6 Cluster: Putative LysR-family transcriptional
regulator; n=4; Actinomycetales|Rep: Putative
LysR-family transcriptional regulator - Streptomyces
coelicolor
Length = 303
Score = 37.1 bits (82), Expect = 0.44
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = -1
Query: 524 RSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDA 357
R+A + T LGLV AGLG+ P L H ++++ +PL + V RR + ++ R DA
Sbjct: 226 RAAETHTQLGLVAAGLGVCIAPLLGR-HPMPAAVVTVPLRQRV-RRHVYVVWRADA 279
>UniRef50_Q46S80 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=3; Cupriavidus|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Ralstonia
eutropha (strain JMP134) (Alcaligenes eutrophus)
Length = 310
Score = 37.1 bits (82), Expect = 0.44
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQR---QPTVDRTTAGRQALEA 537
PL +P+ HPLA + A +S + TL Q+ QP V++ + + A
Sbjct: 161 PLCVDPYHAVLPAQHPLASRDAIAWGDLSNA--NVFTLDQQCGVQPVVEKALSHHH-VRA 217
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
G + + G+V GLGI +P A + + + PL P + T+ ++RRK
Sbjct: 218 GSLQLLGHFAAVFGMVALGLGIGVVPSRAQAGGLHPAAVMRPL-RPQVTSTVMLVRRK 274
>UniRef50_A3SE04 Cluster: Putative uncharacterized protein; n=2;
Sulfitobacter|Rep: Putative uncharacterized protein -
Sulfitobacter sp. EE-36
Length = 294
Score = 37.1 bits (82), Expect = 0.44
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -1
Query: 500 LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
+G V AGLG + +P +A+ A +S+ P P I R LG+++R
Sbjct: 223 VGCVRAGLGFAIIPQIALHDAETASLDWFPFGAPPIHRRLGLVQR 267
>UniRef50_A0Z6E2 Cluster: Transcriptional regulator, LysR family
protein; n=1; marine gamma proteobacterium HTCC2080|Rep:
Transcriptional regulator, LysR family protein - marine
gamma proteobacterium HTCC2080
Length = 295
Score = 37.1 bits (82), Expect = 0.44
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACR---MAGVSGLQNDWRTLLQRQPTVDRTTAGRQ 549
++F P++ + C + H LA + R + G + ++N LL+ P + R
Sbjct: 158 LEFEPILEDAVGAVCHQTHSLADANSLRWHDLIGQTMIRNGTSRLLEATPAKELLAESRI 217
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
+ + + + ++E G + LP LA + S++ IP+ P + R +GII
Sbjct: 218 YISEMISI--------VAMLETGTAYTTLPRLAFQDSA-STLRFIPIKNPTVTRVIGIIT 268
Query: 368 RK 363
R+
Sbjct: 269 RR 270
>UniRef50_Q7NKC0 Cluster: Nitrogen assimilation transcriptional
activator; n=1; Gloeobacter violaceus|Rep: Nitrogen
assimilation transcriptional activator - Gloeobacter
violaceus
Length = 326
Score = 36.7 bits (81), Expect = 0.58
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAACRMAGVSGL-QNDWRT-LLQRQPTVDRTTAGRQALEA 537
TPL E V+ HPLA++ + R+A V+ L Q +R R V A ++
Sbjct: 169 TPLYEEELVVLLPAHHPLARRPSVRLAEVAILPQVVFRDGYAMRTALVQHFRAIGATVDV 228
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
+ L + + +V +G++ LP A+ H +I L EP I R + ++ RKD
Sbjct: 229 AVELNTLEAFKE--MVRQEVGVAILPLCAVQHLGTDLVIA-RLEEPSITRRVELVCRKD 284
>UniRef50_Q47Q09 Cluster: Putative LysR-family transcriptional
regulator; n=1; Thermobifida fusca YX|Rep: Putative
LysR-family transcriptional regulator - Thermobifida
fusca (strain YX)
Length = 308
Score = 36.7 bits (81), Expect = 0.58
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQN-DWRTLLQRQPTVDRTTAGRQALEA 537
F P++ EP + +HPLA K +A + L + DW ++ TV T +A
Sbjct: 163 FHPVMVEPLDVVLPYEHPLATKMELDLA--TDLNDADW--IMSAPGTVWFDTVAAACHQA 218
Query: 536 GLVLRSA----SSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
G RS S + LV AGLG+S +P LA + ++ P+ R L + R
Sbjct: 219 GFHPRSTHVVTDFSAAFALVAAGLGVSMVPRLAWHGIAIAHMVVRPVRNGPRRHVLAVTR 278
>UniRef50_Q471E8 Cluster: Amidase; n=1; Ralstonia eutropha
JMP134|Rep: Amidase - Ralstonia eutropha (strain JMP134)
(Alcaligenes eutrophus)
Length = 485
Score = 36.7 bits (81), Expect = 0.58
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = -1
Query: 677 CRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVLRSASSSTSL 498
C + LA AA +A ++ W L QR P V T+ RQ L G S L
Sbjct: 360 CAPEPSLAGYAAA-IASRDEMRRSWNILFQRHPLVLMPTSCRQPLPWGADQGSVDEMRRL 418
Query: 497 GLVEAGL---GISALPGLAMPHAPYSSI-IGIPLVEPVIR 390
+++ L + LPGL +P + +G+ LV P R
Sbjct: 419 LEIQSPLMAVAVCGLPGLHVPTGLSQGLPVGVQLVAPAFR 458
>UniRef50_Q0S8J9 Cluster: Transcriptional regulator, LysR family
protein; n=2; Actinomycetales|Rep: Transcriptional
regulator, LysR family protein - Rhodococcus sp. (strain
RHA1)
Length = 298
Score = 36.7 bits (81), Expect = 0.58
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGL-- 531
++NE FV+ DHPLA + R+ +S W TL + R + R A +AG
Sbjct: 161 ILNEDFVVALPTDHPLAGRDGVRIEELS--TEPWVTLPADPGSALRDSLQRAAHDAGFTP 218
Query: 530 -VLRSASSSTSL-GLVEAGLGISALPGLAMPHAPYSSIIGIPLV 405
+++SA S +L LV A +G + + ++ +PLV
Sbjct: 219 RIVQSAPDSMALMALVSAEVGCALTVSSVAENVNNPDVVFLPLV 262
>UniRef50_Q7UUN7 Cluster: Probable integral membrane protein; n=1;
Pirellula sp.|Rep: Probable integral membrane protein -
Rhodopirellula baltica
Length = 811
Score = 36.3 bits (80), Expect = 0.76
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = -1
Query: 632 AGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLV-LRSASSSTSLGLVEAGLGISALPG 456
AG+ L N +R + PT+D T A RQA++AG++ A+++T +GL GL + +P
Sbjct: 305 AGIH-LCNYYRDAMCSDPTIDPTAATRQAMQAGILPCWLAATTTIIGLGSLGL-VRLVPV 362
Query: 455 LAMPHAPYSSIIGIPLV 405
A S+ G L+
Sbjct: 363 SAFGFIAAGSVFGTLLL 379
>UniRef50_Q6F9I5 Cluster: Putative transcriptional regulator; n=2;
Acinetobacter|Rep: Putative transcriptional regulator -
Acinetobacter sp. (strain ADP1)
Length = 306
Score = 36.3 bits (80), Expect = 0.76
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
++F PL +E F+ + HPLA++ + + N + TL + P++ R + A +
Sbjct: 161 LEFKPLFDEDFLALLPKSHPLAQQKTVQWPEL--YANPFVTL--QHPSIVRYLLEQNAQQ 216
Query: 539 AGLVL----RSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
L+L S+ LV G+G+SA+P + + + + + +GI+
Sbjct: 217 HDLILDLKVECHQISSLSSLVALGIGVSAIPRHFQHFVDKEHNVLLEIENSEVHQAVGIV 276
Query: 371 RRKD 360
+KD
Sbjct: 277 YKKD 280
>UniRef50_Q65GU9 Cluster: YybE; n=2; Bacillus|Rep: YybE - Bacillus
licheniformis (strain DSM 13 / ATCC 14580)
Length = 299
Score = 36.3 bits (80), Expect = 0.76
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQND-WRTLLQRQPTVDRTTAGRQAL 543
+++T L EP L DHPLA + + ++ ++ + D+ G ++
Sbjct: 155 LEWTVLDTEPLYLVLPADHPLADRKEVAIRSIAHEDFVCFKPGYGLRYVFDQMCRGL-SI 213
Query: 542 EAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 363
L ST LGLV AGLG++ LP A H +S + + + RT+G+ K
Sbjct: 214 SPKLAFEGEEVSTILGLVSAGLGVAILPKTA-EHV-HSPVAFCRVSDYRSERTIGLAVLK 271
Query: 362 D---AGAASGFK 336
D + AA FK
Sbjct: 272 DHYLSPAARNFK 283
>UniRef50_Q4K6W0 Cluster: Transcriptional regulator, LysR family;
n=12; Pseudomonas|Rep: Transcriptional regulator, LysR
family - Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477)
Length = 298
Score = 36.3 bits (80), Expect = 0.76
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQND-WRTLLQRQPTVDRTTAGRQAL 543
+ TPL EP +L HPLA ++ L+ + + ++ Q + +
Sbjct: 159 VQITPLFAEPLLLAVPPQHPLALAPPAGGVDLAQLREEAFISIPHPQRGGLSYLSAELCM 218
Query: 542 EAGLVLRSA----SSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
G R+A +T L L++AG GI+ LP AP +SI +PL + + T+ +
Sbjct: 219 RQGFFPRAARVMSRKTTQLQLIQAGFGIALLPESMQDIAP-ASIRFLPLADADCQSTVAL 277
Query: 374 IRRKD 360
R++
Sbjct: 278 AYRQE 282
>UniRef50_Q4JY11 Cluster: Putative transcriptional regulator; n=1;
Corynebacterium jeikeium K411|Rep: Putative
transcriptional regulator - Corynebacterium jeikeium
(strain K411)
Length = 302
Score = 36.3 bits (80), Expect = 0.76
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = -1
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII---RRK 363
LV S +T GLV AGLG++ LP + P+ + I +PL E R LG++ R +
Sbjct: 219 LVFESMELTTMAGLVSAGLGVALLP-MGDPNLVVAGIEMLPLEED-RERELGMVWSARAR 276
Query: 362 DAGAASGFK 336
A AA F+
Sbjct: 277 SAPAAEAFR 285
>UniRef50_Q12DF5 Cluster: Transcriptional regulator, LysR family;
n=6; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 332
Score = 36.3 bits (80), Expect = 0.76
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Frame = -1
Query: 716 DFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEA 537
DFTPL NE + RR H L ++ +A + DW +LQ + R + A
Sbjct: 175 DFTPLSNEVMQVVVRRGHALVRQKKLPLAALM----DWPWILQPVTSPARHLLEEEFARA 230
Query: 536 GL-----VLRSASSSTSLGLVEAGLGISALP-GLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
L ++ AS +L L++ ++ALP + H + +P+ + GI
Sbjct: 231 RLSTPANIIECASVFATLQLLQTSDAVAALPESVVRDHVKAGLLRALPIPIGSDLKGFGI 290
Query: 374 IRRK 363
+ RK
Sbjct: 291 LTRK 294
>UniRef50_A6WBV3 Cluster: Transcriptional regulator, LysR family;
n=2; Bacteria|Rep: Transcriptional regulator, LysR
family - Kineococcus radiotolerans SRS30216
Length = 310
Score = 36.3 bits (80), Expect = 0.76
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Frame = -1
Query: 716 DFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSG---LQNDWRTLLQRQPTVDRTTAGRQA 546
D L +P+ + HPL+ + +A ++ + ++ R R ++ TA A
Sbjct: 167 DVHRLAEDPYRVLLPATHPLSGRREVELAELATDRWIDSEPRAGWCRGNLLEACTAAGFA 226
Query: 545 LEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
+++ + S V AGLGI+ LP LA P + +P+V P RT+ ++ R
Sbjct: 227 --PAFHVQAHDYAMSAAFVGAGLGITVLPALAAHTLP-DGVRSVPVVRPTPTRTIYVVVR 283
Query: 365 K 363
K
Sbjct: 284 K 284
>UniRef50_A3YAR7 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=3; Gammaproteobacteria|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Marinomonas sp. MED121
Length = 298
Score = 36.3 bits (80), Expect = 0.76
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVD---RTTAGRQ 549
++F L N+ F+ + PL A + L+ D+ TL QR +V ++
Sbjct: 155 LNFQTLFNDRFIAVVPNNSPLRDVDELTWAQL--LEYDFITL-QRPSSVRSMIEEALFKE 211
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
++E + + +T +V GLG++ +P L I +P+ P+I R +GII
Sbjct: 212 SIELQVTFDAHQLATIGRMVAEGLGVAVVPALCERQMKEQGAICLPIKAPIIARNVGIIT 271
Query: 368 R 366
+
Sbjct: 272 K 272
>UniRef50_A3VR68 Cluster: Putative transcriptional regulator, LysR
family protein; n=1; Parvularcula bermudensis
HTCC2503|Rep: Putative transcriptional regulator, LysR
family protein - Parvularcula bermudensis HTCC2503
Length = 276
Score = 36.3 bits (80), Expect = 0.76
Identities = 33/121 (27%), Positives = 52/121 (42%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
F PL ++PF + R HPL AA R + L+ + P DR + +
Sbjct: 145 FIPLADDPFKIAVARHHPL---AASREIRIEDLRAEPFIHRPYCPQADRMELAPSMVAS- 200
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAG 354
V ++ + L L+ AGLG++ +P ++ + + RRT GI RK A
Sbjct: 201 -VAQAVNDQQLLDLIAAGLGVAFVPASHGEAREDIVVLTLTGADAGARRT-GISHRKTAN 258
Query: 353 A 351
A
Sbjct: 259 A 259
>UniRef50_A0LA88 Cluster: Transcriptional regulator, LysR family;
n=1; Magnetococcus sp. MC-1|Rep: Transcriptional
regulator, LysR family - Magnetococcus sp. (strain MC-1)
Length = 308
Score = 36.3 bits (80), Expect = 0.76
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQ-----------PTVDRT 564
TPL EPF + +HP A +++ +AG L LL+R PT +
Sbjct: 158 TPLYREPFRVTVPSNHPWANRSS--IAGHE-LDQQPLLLLRRGHCLRDQIINLCPTYNTP 214
Query: 563 TAGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAM--PHAPYSSIIGIPLVEPVIR 390
+ L + VL S+S T +V G GI+ LP P + ++ IP EP
Sbjct: 215 DSDPNGLSS--VLESSSLETIRHMVAGGAGITVLPSTVADSPFSHQDTLRHIPFAEPAPY 272
Query: 389 RTLGIIRRK 363
RT+ ++ R+
Sbjct: 273 RTVSLVWRR 281
>UniRef50_Q6N398 Cluster: Transcriptional regulator, LysR family;
n=1; Rhodopseudomonas palustris|Rep: Transcriptional
regulator, LysR family - Rhodopseudomonas palustris
Length = 276
Score = 35.9 bits (79), Expect = 1.0
Identities = 33/126 (26%), Positives = 58/126 (46%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVL 525
L++EPF L DHP + + + +A + G R +R T R + +V
Sbjct: 150 LLSEPFRLFVGPDHPWSGRRSVALADLDGQPFVLRQGCERIGT-GRRLVSTAGVRFRIVA 208
Query: 524 RSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAGAAS 345
++ ST+ LV AGLG + P + AP + + + ++R + +I ++ AGA +
Sbjct: 209 KTRQESTAAALVAAGLGCTLAPA-SWGGAP---LRALDVGGLTLQRDVTLIWKQPAGAKA 264
Query: 344 GFKRET 327
K T
Sbjct: 265 AAKLAT 270
>UniRef50_Q13R07 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia xenovorans LB400|Rep: Transcriptional
regulator, LysR family - Burkholderia xenovorans (strain
LB400)
Length = 314
Score = 35.9 bits (79), Expect = 1.0
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAK-KAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQAL 543
+ + P++ + F + DHPLAK + R A +S ++ L + AL
Sbjct: 158 LTYLPILGDRFGVLYPDDHPLAKIRQPLRWADLSEFEH---IALANDTGIGAFLDSHPAL 214
Query: 542 ----EAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
+A L R++S+++ ++ G IS LP L++ +P L EPVI R + +
Sbjct: 215 GFHQKASLHDRASSTNSLFAMLNLGGRISVLPELSVLASPLKKFTFRELSEPVITREVCL 274
Query: 374 IRRK 363
I R+
Sbjct: 275 ITRQ 278
>UniRef50_Q0HFP5 Cluster: Transcriptional regulator, LysR family;
n=11; Shewanella|Rep: Transcriptional regulator, LysR
family - Shewanella sp. (strain MR-4)
Length = 296
Score = 35.9 bits (79), Expect = 1.0
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Frame = -1
Query: 698 NEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDR---TTAGRQALEAGLV 528
N+P V+ +++PL + M + L ++ + + + + T+ + T +
Sbjct: 163 NDPMVVVLPKENPLTSRP---MLSIHDLVDEPQVMFETEYTLYQLVLTACQHAGFTPKNI 219
Query: 527 LRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
R + + + LV AG G+ LP S ++ IPL +R L + RK+
Sbjct: 220 TRVSQADFGIALVAAGTGVMILPRSIARRYSVSGVVNIPLASDELRWELSLFWRKE 275
>UniRef50_Q027B4 Cluster: Putative uncharacterized protein
precursor; n=1; Solibacter usitatus Ellin6076|Rep:
Putative uncharacterized protein precursor - Solibacter
usitatus (strain Ellin6076)
Length = 289
Score = 35.9 bits (79), Expect = 1.0
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -1
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
AG +L + S+ + + G+ AL L PY + I L + IRRTL I RKD
Sbjct: 42 AGHILIGIFTMVSIYAIASWAGLEALRSLLSFIVPYIGLAIIVLFQSEIRRTLARIGRKD 101
Query: 359 -AGAASGFK 336
G A GF+
Sbjct: 102 WFGLARGFR 110
>UniRef50_A5VCT6 Cluster: Transcriptional regulator, LysR family;
n=1; Sphingomonas wittichii RW1|Rep: Transcriptional
regulator, LysR family - Sphingomonas wittichii RW1
Length = 321
Score = 35.9 bits (79), Expect = 1.0
Identities = 31/109 (28%), Positives = 51/109 (46%)
Frame = -1
Query: 695 EPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVLRSA 516
+PF L HPLA++ A VSG + R + + + L +V++S
Sbjct: 175 QPFSLFMSEKHPLAREEAIWPVQVSGERLVLPDAGSRLLEIIHSVFTERGLPLNIVMKSP 234
Query: 515 SSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
S L V G+G++ LP + + H P ++I GI + P++ L IR
Sbjct: 235 SIQVILDSVAQGMGVTMLPRI-LGH-PAAAIGGI-VERPILSDELSDIR 280
>UniRef50_A4ZPZ1 Cluster: Hydrogen peroxid-inducible genes activator
OxyR; n=7; Proteobacteria|Rep: Hydrogen
peroxid-inducible genes activator OxyR - Chromobacterium
violaceum
Length = 312
Score = 35.9 bits (79), Expect = 1.0
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHP---LAKKAACRMAGVSGLQNDWRTLLQRQP-TVDRTTAGRQAL 543
+PL +EPFV+ + HP L AA ++A S L + Q A RQ+
Sbjct: 158 SPLYDEPFVVATPKGHPWEKLGAIAANQLADESVLLLTQGNCFRDQVLQACSDLASRQSH 217
Query: 542 EAGLV--LRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
L L+ +S +T +V +G+G++ +P ++ S + +P P +R + ++
Sbjct: 218 GGTLAANLQGSSLNTIRHMVASGMGVTVMPSTSIGPTDESLLSVVPFKTPAPQRRVLLVT 277
Query: 368 RK 363
RK
Sbjct: 278 RK 279
>UniRef50_P37499 Cluster: Uncharacterized HTH-type transcriptional
regulator yybE; n=2; Bacillus|Rep: Uncharacterized
HTH-type transcriptional regulator yybE - Bacillus
subtilis
Length = 278
Score = 35.9 bits (79), Expect = 1.0
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAG----R 552
I + L +E + DHPLA + + + ++G R +L ++ R T +
Sbjct: 141 IQWIKLWSEELFVFVPNDHPLASRESITLNEIAGE----RFILLKKGYALRMTVDELFEK 196
Query: 551 QALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
++ ++ ++T+ G V AGLGIS LP L S I I + P +R +GI
Sbjct: 197 ANIQPNIMFEGEEATTAAGFVAAGLGISILPDL--KGLDQSKITKIRVSWPECQRVIGI 253
>UniRef50_Q5GYQ1 Cluster: Galactose-binding protein regulator; n=6;
Xanthomonas|Rep: Galactose-binding protein regulator -
Xanthomonas oryzae pv. oryzae
Length = 345
Score = 35.5 bits (78), Expect = 1.3
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
F PL +EP + R HPLA +A + A + +++ W +L +V R +E G
Sbjct: 194 FEPLADEPHSVIARAGHPLASRAGLQHADL--VRHGW--ILPPADSVLRARLDSMFMEHG 249
Query: 533 L-----VLRSASSSTSLGLVEAGLGISALPGLAM-PHAPYSSIIGIPLVEPVIRRTLGII 372
+ + ++S + L+ ++ALP ++ P + +P+ V + GII
Sbjct: 250 VQAPTNAIETSSLPVTSTLLRGTDMLTALPVESVAPLIQAKLLTVLPIKLGVRMESFGII 309
Query: 371 RRKDAGAASGFKR 333
RR+D G +R
Sbjct: 310 RRRDYNLPPGAER 322
>UniRef50_Q12GU5 Cluster: Transcriptional regulator, LysR family;
n=1; Polaromonas sp. JS666|Rep: Transcriptional
regulator, LysR family - Polaromonas sp. (strain JS666 /
ATCC BAA-500)
Length = 293
Score = 35.5 bits (78), Expect = 1.3
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVD--RTTAGRQALEAG 534
P + P +L HPLA + A A L+ D TL+Q A R A +
Sbjct: 160 PYRSIPLMLVMPAAHPLAGRGALSFA--DALEFDLITLMQGTAIRGWALAAAARIARKPK 217
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGL-AMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDA 357
++ S +V+AGLGI+ +P +P+ + +PL + R L ++ D
Sbjct: 218 FTMQVQSYEAIRAMVQAGLGIAVMPAANILPYEDLLQVRALPLTDDWARMQLYLV--CDR 275
Query: 356 GAA 348
GAA
Sbjct: 276 GAA 278
>UniRef50_A6UGP0 Cluster: Transcriptional regulator, LysR family;
n=2; Sinorhizobium|Rep: Transcriptional regulator, LysR
family - Sinorhizobium medicae WSM419
Length = 298
Score = 35.5 bits (78), Expect = 1.3
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
I + L+ + L CR DH A+ A ++G L + P R +
Sbjct: 157 IQASVLMRDQLTLICRSDHRFARAPQVSWANLAG--EALIGLAKDNPL--RGLVDHALIA 212
Query: 539 AGLVLRS----ASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
+G+ +++ S+T++ +V GLGI+ LP + + + LV+PVI R + I+
Sbjct: 213 SGVEVKTRYEVRFSTTAISMVAEGLGIAILPENSRQLTTNVDVRIVDLVDPVISRNISIL 272
Query: 371 R 369
+
Sbjct: 273 Q 273
>UniRef50_A1UCZ9 Cluster: Transcriptional regulator, LysR family;
n=4; Actinomycetales|Rep: Transcriptional regulator,
LysR family - Mycobacterium sp. (strain KMS)
Length = 302
Score = 35.5 bits (78), Expect = 1.3
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHP-LAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGL- 531
L E +V + HP L+ AA R+ ++ W +R +D A R +AGL
Sbjct: 161 LGEEAYVAVLPKGHPRLSDGAALRLEDLAS--EGW-IRFRRASLLDDYLA-RTLADAGLS 216
Query: 530 ---VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
V R++ ST++ LV GLG++ +P A+P + PLV P + + + R++
Sbjct: 217 PQTVARASQISTAVRLVSQGLGVTVVPASAIPEG--FEELACPLV-PALTEPVLVGMRRN 273
Query: 359 AGAA 348
G+A
Sbjct: 274 PGSA 277
>UniRef50_Q47141 Cluster: Hca operon transcriptional activator;
n=12; Enterobacteriaceae|Rep: Hca operon transcriptional
activator - Escherichia coli (strain K12)
Length = 296
Score = 35.5 bits (78), Expect = 1.3
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKK---AACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQ 549
ID+ L +EP V+ DHPLA + A ++ GV+ + D P V + ++
Sbjct: 154 IDYLELFDEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPVYSGSLAPIV-KAWFAQE 212
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPG 456
+ +V + + ++ LV GLG++ +PG
Sbjct: 213 NSQPNIVQVATNILVTMNLVGMGLGVTLIPG 243
>UniRef50_Q83BM7 Cluster: Hydrogen peroxide-inducible genes
activator OxyR; n=3; Coxiella burnetii|Rep: Hydrogen
peroxide-inducible genes activator OxyR - Coxiella
burnetii
Length = 311
Score = 35.1 bits (77), Expect = 1.8
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Frame = -1
Query: 695 EPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQ-----RQPTVDRTTAGRQALEAGL 531
EPF + + HPLAKK + +A L+ + LL+ R+ ++ + E G
Sbjct: 163 EPFYVALPKHHPLAKKKSVTLA---DLEKETLLLLEEGHCLREQALEACSMTAAKTETG- 218
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
++ S T LV AG GI+ LP L++ +A S + + R++G++ R
Sbjct: 219 -FKATSLETLRHLVAAGAGITLLPALSV-NAEKSELAIKSFNATIPSRSIGMLWR 271
>UniRef50_Q7URH5 Cluster: Probable transcription regulator; n=1;
Pirellula sp.|Rep: Probable transcription regulator -
Rhodopirellula baltica
Length = 325
Score = 35.1 bits (77), Expect = 1.8
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQ--NDWRTLLQRQPTVDRTTAGRQALEAG 534
P +EP L C DHP AK+ + +SG++ R L+ RQ +D+ R +
Sbjct: 161 PWQSEPMRLVCSDDHPFAKRTEVSASELSGMEMVGFERGLVLRQ-AIDQCLK-RAGISVV 218
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSS---IIGIPLVEPVIRRTLGIIRRK 363
+ ++ + + ++A G+ +P A+ + ++ P ++ V R LGII R+
Sbjct: 219 TQMEFDNADSMVRAIQANRGLGIVPEAAVRRETANGTLRVVACPEIQMV--RPLGIIFRR 276
Query: 362 DA 357
+
Sbjct: 277 SS 278
>UniRef50_Q39LY6 Cluster: Transcriptional regulator, LysR family;
n=4; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 309
Score = 35.1 bits (77), Expect = 1.8
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+D TP + + + HPLA + + L ++ ++ R A R ++
Sbjct: 169 VDVTPYREDRLIAVVPQGHPLATRTSVT---TEDLLSENLIVVGAMVGAIRAAARRLGVD 225
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEP-VIRR 387
S+ ++ LV+AGLG++ P + H +S + + L EP +RR
Sbjct: 226 FQPRYDVRSTGVAVSLVQAGLGVTVQPECMVSHELFSRVAVLELAEPWAVRR 277
>UniRef50_Q1IRZ3 Cluster: Transcriptional regulator, LysR family;
n=1; Acidobacteria bacterium Ellin345|Rep:
Transcriptional regulator, LysR family - Acidobacteria
bacterium (strain Ellin345)
Length = 296
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
A+ +V S +T L +V AG+G+SA+P +A+ P+ IP+ R +GI+
Sbjct: 212 AMSPSVVFESGQFATILAMVSAGMGVSAVPAMAV--QPHPGCKFIPISGKHSSRKVGIV 268
>UniRef50_Q0LUY7 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Caulobacter sp. K31|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Caulobacter sp. K31
Length = 302
Score = 35.1 bits (77), Expect = 1.8
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGL---QNDWRTLLQRQPTVDRTTAGRQ 549
I+ + EP VL RRDHPLA + + V+ L D + ++R ++ +G
Sbjct: 155 IEVVARIPEPTVLVVRRDHPLAGRTQVTLDEVAALPLAMLDDQYAIRRDFDLECRNSG-- 212
Query: 548 ALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIR-RTLGII 372
L + +++ S + V +GLG + +P + S++ IP+ V R T+ +I
Sbjct: 213 -LSSNILVESTTLLMLTDFVRSGLGATLMPQRTVTD---PSLVSIPVDREVFRGNTIDLI 268
>UniRef50_A6VTL6 Cluster: Transcriptional regulator, LysR family;
n=6; Gammaproteobacteria|Rep: Transcriptional regulator,
LysR family - Marinomonas sp. MWYL1
Length = 322
Score = 35.1 bits (77), Expect = 1.8
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Frame = -1
Query: 716 DFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEA 537
DFTPL E F L HPL+ + + + +W LL + T R +A
Sbjct: 170 DFTPLAPEKFCLVANSSHPLSGEETVSLEKLF----EWPWLLYPKGTPIRDRMEESFAKA 225
Query: 536 GLVLR-----SASSSTSLGLVEAGLGISALPG-LAMPHAPYSSIIGIPLVEPVIRRTLGI 375
G+ L + S T L L++ G I LP + PH + + ++ + GI
Sbjct: 226 GVALPQDIVVTISVQTFLELLQRGPMIGMLPTVMVKPHVESGVLTVLKTPLDLVPQYYGI 285
Query: 374 IRRKD 360
+ RK+
Sbjct: 286 LTRKN 290
>UniRef50_A4FD06 Cluster: LysR-family transcriptional regulator;
n=4; Actinomycetales|Rep: LysR-family transcriptional
regulator - Saccharopolyspora erythraea (strain NRRL
23338)
Length = 308
Score = 35.1 bits (77), Expect = 1.8
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
++ PL +P VL DHPLA+ +A + W R + R E
Sbjct: 160 LEIIPLGTDPVVLVLPSDHPLARHRVVDLAACA--NETW--ACDRSGSYMAELTQRLCRE 215
Query: 539 AGLVLRSASSSTS----LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
+G R A ++ L V A ++ LP LA+ AP +++ L PV R ++
Sbjct: 216 SGFEPRVACRFSNYLLLLDHVAARRSVALLPALAV--APSRALVTRELTTPVHRNVTIVV 273
Query: 371 RRKDAGAAS 345
RR A A+
Sbjct: 274 RRGTAPRAA 282
>UniRef50_A1RGH4 Cluster: Transcriptional regulator, LysR family;
n=4; Shewanella|Rep: Transcriptional regulator, LysR
family - Shewanella sp. (strain W3-18-1)
Length = 296
Score = 35.1 bits (77), Expect = 1.8
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Frame = -1
Query: 698 NEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDR---TTAGRQALEAGLV 528
N+P V+ +++PLA + ++ L + + + + + T+ + T +
Sbjct: 163 NDPMVVVLPKENPLASR---EHLFITDLNHQPQVMFETEYTLYQLVLTACQAAGFTPQNI 219
Query: 527 LRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
R + + + LV AG GI LP S ++ IPL +R L + RK+
Sbjct: 220 TRVSQADFGIALVAAGTGIMVLPRSIARRYSVSGVVNIPLASDELRWELSLFWRKE 275
>UniRef50_A0NMM0 Cluster: Transcriptional regulator; n=1; Stappia
aggregata IAM 12614|Rep: Transcriptional regulator -
Stappia aggregata IAM 12614
Length = 281
Score = 35.1 bits (77), Expect = 1.8
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQ--PTVDRTTAGRQALE 540
FT L EP+VL R HPLA + + + + TL+ R+ P D A +
Sbjct: 145 FTELYTEPYVLAVARSHPLAGRNRISIEDLRSV-----TLVSRRYCPRHDAMLAEFALAD 199
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPL-VEPVIRRTLGIIRRK 363
A L + + + + L GLG A A SS+ GIPL E + R++G+ +K
Sbjct: 200 APLKVSAEAVNDQQVLELTGLGFGAAILPAGHLKLKSSLRGIPLDHEGLEHRSVGVAVKK 259
Query: 362 DAGAASGFK 336
A F+
Sbjct: 260 TTFADEMFR 268
>UniRef50_Q89VI5 Cluster: Transcriptional regulatory protein; n=7;
Rhizobiales|Rep: Transcriptional regulatory protein -
Bradyrhizobium japonicum
Length = 312
Score = 34.7 bits (76), Expect = 2.3
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -1
Query: 554 RQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
R L+ + +R+ +T LV+AGLGI+ + + H Y I + + EP T
Sbjct: 211 RNRLDYNITIRARFGTTVCALVKAGLGIAVIDQFTVAHGGYPGIELLKITEPTRFDTYIA 270
Query: 374 IRR 366
++R
Sbjct: 271 VKR 273
>UniRef50_Q46Y32 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=8; Proteobacteria|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Ralstonia
eutropha (strain JMP134) (Alcaligenes eutrophus)
Length = 338
Score = 34.7 bits (76), Expect = 2.3
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = -1
Query: 569 RTTAGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIR 390
R T R ALE L + S +L LVEAGLG++ L A ++ + + V+P +
Sbjct: 222 RQTLARHALEPHSTLEVQTYSLALSLVEAGLGMALLDQFTALSAS-TARVSLHAVQPALP 280
Query: 389 RTLGIIRRKDAGAAS 345
+ ++R A+S
Sbjct: 281 FEIQLLRASHRAASS 295
>UniRef50_Q2CBA9 Cluster: Transcriptional regulatory protein; n=1;
Oceanicola granulosus HTCC2516|Rep: Transcriptional
regulatory protein - Oceanicola granulosus HTCC2516
Length = 292
Score = 34.7 bits (76), Expect = 2.3
Identities = 30/112 (26%), Positives = 51/112 (45%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGL 531
+PL E +V+ DH L +K A +A +SG R + + V + A + +E
Sbjct: 159 SPLYEERYVVILPPDHRLREKNAIGLADLSGESYVDRLACEMREMVMKVCA-VEGVELYA 217
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
RS +V AG+G + P ++ P +I PLV P + R++ +
Sbjct: 218 RFRSEREDWVQAMVSAGIGFAFAPEYSV-FVP--GVIQRPLVAPSVTRSIAL 266
>UniRef50_Q15VE5 Cluster: Transcriptional regulator, LysR family;
n=1; Pseudoalteromonas atlantica T6c|Rep:
Transcriptional regulator, LysR family -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 297
Score = 34.7 bits (76), Expect = 2.3
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGR-QALEA 537
F P+ + F+ + HPL+++++ ++ Q+ + + R + R +ALE
Sbjct: 159 FHPMFTDEFIAVLPKLHPLSQQSSVTWNALA--QSPF-IAMNRGSAIRRWVDNHYEALEL 215
Query: 536 GL-VLRSASSSTSLG-LVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
+ ++ AS +LG VE GLG+S +PGL + +P+ + + +G+I++
Sbjct: 216 KVNMVAEASQLATLGQFVEHGLGVSIVPGLCQQQMQRLGLRCLPIEGDRLSKRVGMIKK 274
>UniRef50_Q143E2 Cluster: Nucleobase/Cation Symporter, (NCS1)
Family; n=14; Bacteria|Rep: Nucleobase/Cation Symporter,
(NCS1) Family - Burkholderia xenovorans (strain LB400)
Length = 438
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -1
Query: 509 STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAGAASGFKRE 330
S +GL+ A G +PGL++PHA + +IG ++ V+ G+I AA R
Sbjct: 38 SLGIGLLVAQAGALLVPGLSLPHALLAIVIG-SVIGVVLLALAGVIGTDTGLAAMSSLRP 96
Query: 329 TSTTNGA 309
T GA
Sbjct: 97 TLGVRGA 103
>UniRef50_O30766 Cluster: Polyketide synthase modules 4 and 5; n=1;
Streptomyces caelestis|Rep: Polyketide synthase modules
4 and 5 - Streptomyces caelestis
Length = 3654
Score = 34.7 bits (76), Expect = 2.3
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = -1
Query: 665 HPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVLRSASSSTSLGLVE 486
H + AA +AGV L++ R + R + R AGR ++ A + L +A + L E
Sbjct: 658 HSQGEIAAAHVAGVLSLEDAARVVALRSQLIARELAGRGSM-ASVALAAADVESRLAGAE 716
Query: 485 AGLGISALPGLAMPHAPYSSII-GIP 411
AG G+ + +A + P ++++ G P
Sbjct: 717 AGGGVRDVE-IAAVNGPETTVVCGAP 741
>UniRef50_A7IF06 Cluster: Transcriptional regulator, LysR family;
n=4; Alphaproteobacteria|Rep: Transcriptional regulator,
LysR family - Xanthobacter sp. (strain Py2)
Length = 325
Score = 34.7 bits (76), Expect = 2.3
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 494 LVEAGLGISALPGLAMPHAPYSSIIGI-PLVEPVIRRTLGIIRRKD 360
LVE GLG S LPG A+ ++ P+ EPV+ R L ++R D
Sbjct: 233 LVEGGLGYSILPGAALRAEVEKGLLRTWPMGEPVLSRDLHLVRPAD 278
>UniRef50_A7ICZ0 Cluster: Transcriptional regulator, LysR family;
n=1; Xanthobacter autotrophicus Py2|Rep: Transcriptional
regulator, LysR family - Xanthobacter sp. (strain Py2)
Length = 292
Score = 34.7 bits (76), Expect = 2.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 500 LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
+ +V AGLG++ +P P + ++ +PL P RT+G+ R
Sbjct: 225 VAMVSAGLGVAIIPDWTGPRLEGAKVVSLPLPPPQPSRTIGLYSR 269
>UniRef50_A4XEX1 Cluster: Transcriptional regulator, LysR family;
n=2; Sphingomonadaceae|Rep: Transcriptional regulator,
LysR family - Novosphingobium aromaticivorans (strain
DSM 12444)
Length = 299
Score = 34.7 bits (76), Expect = 2.3
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = -1
Query: 539 AGLVLRSASSSTS----LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
AG V R A +T L LVEAGLG++ +P + A + + +PL EP I +G+
Sbjct: 212 AGFVPRVAQEATQVQTILSLVEAGLGVALIPARSARFAG-AGVRIVPLAEP-IPIDMGLA 269
Query: 371 RRKDAG-AASGFKR 333
R AG A+ F R
Sbjct: 270 RAPGAGPVAANFVR 283
>UniRef50_A4FGE5 Cluster: LysR-family transcriptional regulator;
n=1; Saccharopolyspora erythraea NRRL 2338|Rep:
LysR-family transcriptional regulator -
Saccharopolyspora erythraea (strain NRRL 23338)
Length = 301
Score = 34.7 bits (76), Expect = 2.3
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = -1
Query: 665 HPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVLRSASSSTSLGLVE 486
H LA + A +A + DW Q + R + +A S L LVE
Sbjct: 178 HRLAGRDAVELAETAS--EDWIAPHHDQHELIRVACAAAGFTPRVAHEAAEWSCVLSLVE 235
Query: 485 AGLGISALPGLAMPHAPYSSIIGIPLV-EPV-IRRTLGIIRR 366
G G+ LP LA A + ++ IPL+ EP R L +RR
Sbjct: 236 GGFGVCLLPALA-GVAAHRGLVRIPLLGEPAPARSVLTCVRR 276
>UniRef50_A4FE82 Cluster: LysR-family transcriptional regulator;
n=4; Actinomycetales|Rep: LysR-family transcriptional
regulator - Saccharopolyspora erythraea (strain NRRL
23338)
Length = 294
Score = 34.7 bits (76), Expect = 2.3
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAAC--RMAGVS---GLQNDWRTLLQRQPTVDRTTAGRQALE 540
L EP VL C DHP+A++ R G DW T + VDR A +E
Sbjct: 161 LDTEPLVLACAGDHPMAERDRVDPRELGEQPFVDFHPDWGT----RDVVDRVLA-ETGVE 215
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPV-IRRTLGIIRRK 363
+ L + L LV GLGI+ +P A + +PL P T+ I
Sbjct: 216 RRVALEVTDVHSLLELVACGLGIALVP--RSFSAKNGQVRFVPLASPAPTWETVAITSDP 273
Query: 362 DAGAASGFKRE 330
+ AA+ R+
Sbjct: 274 TSTAAAALLRD 284
>UniRef50_A0JYV6 Cluster: Transcriptional regulator, LysR family;
n=2; Arthrobacter|Rep: Transcriptional regulator, LysR
family - Arthrobacter sp. (strain FB24)
Length = 327
Score = 34.7 bits (76), Expect = 2.3
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTA-GRQA-LEAGL 531
L EP L +H LA++ + R+A + Q+ + + T A R+A +
Sbjct: 170 LYREPLRLVVHHEHRLARRKSARLADIR--QDPFVAMGHGYGMRSLTDALFREAGFRPRI 227
Query: 530 VLRSASSSTSLGLVEAGLGISAL-PGLAMP------HAPYSSIIGIPLVEPVIRRTLGII 372
S S T GLV AGLG+S L PG P H + +PL + R +G+
Sbjct: 228 AFESQDSHTVRGLVSAGLGVSILPPGGQAPGRTVTEHTGNLGWVEVPLTSGLAFREIGLA 287
Query: 371 RRKDAG 354
R+ G
Sbjct: 288 WRERRG 293
>UniRef50_Q82Q95 Cluster: Putative LysR-family transcriptional
regulator; n=2; Actinomycetales|Rep: Putative
LysR-family transcriptional regulator - Streptomyces
avermitilis
Length = 303
Score = 34.3 bits (75), Expect = 3.1
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
I+ P+V P+VL R D PLA + A ++ + L R P + A A
Sbjct: 156 IEQRPVVALPWVLAVRADDPLAGRPCVNTAELTDIS------LIRLPHNSTSGARLDAAF 209
Query: 539 AGLVLRSASSS------TSLGLVEAGLG---ISALPGLAMPHAPYSSIIGIPLVEPV 396
A L +RS+S + T+L L E GLG + LPG +P ++ IP + P+
Sbjct: 210 AELGVRSSSDTSVADWDTALLLAELGLGHAVVPVLPGWQVPGDGPLRLVPIPDLPPL 266
>UniRef50_Q7W9G9 Cluster: Probable LysR-family transcriptional
regulator; n=2; Bordetella|Rep: Probable LysR-family
transcriptional regulator - Bordetella parapertussis
Length = 296
Score = 34.3 bits (75), Expect = 3.1
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE-AGL- 531
+++EP ++ DHPL +K R V+ L L R A QA + AG
Sbjct: 162 VLDEPMLVALPPDHPLCRK---RTVPVAALAEQDFVLYPRPIGAGLYDAIMQACQRAGFT 218
Query: 530 --VLRSASSSTS-LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
V++ A S + LV AG+GI+ +P AM H + I+ P+ R L + R+
Sbjct: 219 PRVIQEAPQMASIISLVAAGVGIAVVPA-AMRHMGAAGIVYRPIRGDAPRALLDMAYRRQ 277
Query: 359 AGAAS 345
+A+
Sbjct: 278 PRSAA 282
>UniRef50_Q7NSL7 Cluster: Probable transcription regulator, LysR
family; n=1; Chromobacterium violaceum|Rep: Probable
transcription regulator, LysR family - Chromobacterium
violaceum
Length = 240
Score = 34.3 bits (75), Expect = 3.1
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = -1
Query: 575 VDRTTAGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPV 396
V R A + LE +V + + T +GLV AG+GI+ LP + ++ +PL +
Sbjct: 154 VVRQLALQNGLELKMVQEAGEAITQIGLVAAGVGIAILPS-PLECVQIPAVRYVPLSDDG 212
Query: 395 IRRTLGIIRRKD 360
++GI R+D
Sbjct: 213 AYLSMGIAVRRD 224
>UniRef50_Q13JN6 Cluster: Transcriptional regulator, LysR family;
n=2; Burkholderia|Rep: Transcriptional regulator, LysR
family - Burkholderia xenovorans (strain LB400)
Length = 312
Score = 34.3 bits (75), Expect = 3.1
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSG----LQNDWRTLLQRQPTVDRTTAGRQALEA 537
+V+EP + R HP A+ ++A ++G L + R ++ +G E
Sbjct: 185 IVSEPLCVALSRSHPRARARRLKIAQLAGEPFVLASGEVAPTLRATILEHCRSG--GFEP 242
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVE-PVIRRTL 381
+ T L LV+ G+G++ +P +M A + ++ PLV+ P+I + L
Sbjct: 243 DIRFEVQLQQTVLSLVDEGVGVALVPA-SMRKAQLAGVVFRPLVDAPLIEQVL 294
>UniRef50_Q0C031 Cluster: Transcriptional regulator, LysR family;
n=1; Hyphomonas neptunium ATCC 15444|Rep:
Transcriptional regulator, LysR family - Hyphomonas
neptunium (strain ATCC 15444)
Length = 312
Score = 34.3 bits (75), Expect = 3.1
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = -1
Query: 569 RTTAGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMP--HAPYSSIIGI---PLV 405
R L GLVL++ SL + L ++ + G +P AP ++ +G+ P++
Sbjct: 198 RRAVDEGVLRQGLVLKNTMEINSLETAK-DLAVAGIAGCILPLGSAPDAASLGLRLRPII 256
Query: 404 EPVIRRTLGIIRRKD 360
P + RT+ ++RR D
Sbjct: 257 SPALTRTIYLVRRYD 271
>UniRef50_A6V1Z2 Cluster: Transcriptional regulator, LysR family;
n=11; Pseudomonas|Rep: Transcriptional regulator, LysR
family - Pseudomonas aeruginosa PA7
Length = 300
Score = 34.3 bits (75), Expect = 3.1
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Frame = -1
Query: 716 DFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEA 537
D+ P NEP + HP A A+ + ++ D LL +Q R LEA
Sbjct: 155 DYQPFCNEPLDVLLPAGHPKASAASVALGELA----DSPFLLYQQSFTLNDRLLRACLEA 210
Query: 536 GLVLRSASSSTS---LG-LVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
G R S LG LV A G+ LP + ++ + L EP +R + I
Sbjct: 211 GFSPREGGRSGQADFLGALVAANQGVVLLPRVIAREIERPGVVRVLLREPDLRWDIAFIW 270
Query: 368 RK 363
R+
Sbjct: 271 RR 272
>UniRef50_A4SYM5 Cluster: Transcriptional regulator, LysR family;
n=1; Polynucleobacter sp. QLW-P1DMWA-1|Rep:
Transcriptional regulator, LysR family -
Polynucleobacter sp. QLW-P1DMWA-1
Length = 311
Score = 34.3 bits (75), Expect = 3.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -1
Query: 527 LRSASSSTSLGLVEAGLGISALPGLAMPHAPYSS--IIGIPLVEPVIRRTLGIIRRKDAG 354
+ + S T L +VE+GLGI+ LP +A+ + +S ++ L P +R + ++ R
Sbjct: 223 MEATSLLTLLQMVESGLGIALLPEMAVKSSLLNSTELVAKALASPAPKRVIALVARASTA 282
Query: 353 AASGF 339
A F
Sbjct: 283 HAQEF 287
>UniRef50_A3VVC0 Cluster: Hydrogen peroxide-inducible genes
activator protein; n=1; Parvularcula bermudensis
HTCC2503|Rep: Hydrogen peroxide-inducible genes
activator protein - Parvularcula bermudensis HTCC2503
Length = 306
Score = 34.3 bits (75), Expect = 3.1
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVL 525
L EP L DHPLA+K + G+ D TL R D+ R E+G L
Sbjct: 162 LFREPVFLAVAADHPLARKKTFGPPDLQGV--DVLTLSPRHHLHDQVM--RLCEESGARL 217
Query: 524 RSASSSTSLGLVE--AGLGISA--LPGLAMPHAPYSSIIGIPLVEPVIR---RTLGIIRR 366
R TSL + AG+G+ A LP L + + + +++P R R++ + R
Sbjct: 218 RRDYEGTSLDALRQMAGMGLGATFLPALYV-QSEIRRDADVRILKPARRPMFRSIALAWR 276
Query: 365 KDAG 354
K AG
Sbjct: 277 KGAG 280
>UniRef50_A3IAK3 Cluster: Transcriptional regulators, LysR family
protein; n=1; Bacillus sp. B14905|Rep: Transcriptional
regulators, LysR family protein - Bacillus sp. B14905
Length = 304
Score = 34.3 bits (75), Expect = 3.1
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = -1
Query: 551 QALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
Q + + + T + +V GLGI+ +P LA+P+ +I+ L EP R + II
Sbjct: 220 QEVSPNIQFNVEDNQTIIAMVREGLGITIMPELALPYNLQGTIVKPLLPEP--SREISII 277
Query: 371 RRKDAGAASGFKRETSTTNGAV 306
R + K TT V
Sbjct: 278 TRSKKQSLPAVKAFIKTTMDCV 299
>UniRef50_Q7WNN3 Cluster: LysR-family transcriptioanl regulator;
n=1; Bordetella bronchiseptica|Rep: LysR-family
transcriptioanl regulator - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 303
Score = 33.9 bits (74), Expect = 4.1
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTA--GRQALEAGL 531
L + P +L + HP A++ A VS +L + ++++ A GR +
Sbjct: 168 LFSSPIMLVVAQHHPFARRRAVTWEDVSRQT----LVLSHRSSLEQLHADTGRDFSRMPV 223
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
+ S S L +VE+G G++ A+ + ++ IP+VEP + +G+
Sbjct: 224 IELSQLHSI-LSVVESGDGVTIFAEYALKYLRIHKVVAIPVVEPEVMIRVGL 274
>UniRef50_Q3K843 Cluster: Transcriptional Regulator, LysR family;
n=4; Proteobacteria|Rep: Transcriptional Regulator, LysR
family - Pseudomonas fluorescens (strain PfO-1)
Length = 278
Score = 33.9 bits (74), Expect = 4.1
Identities = 26/85 (30%), Positives = 40/85 (47%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
F PL E +V+ DHP+A AG + ++ DW T Q P+ R A
Sbjct: 144 FLPLWEESYVMALPLDHPMAN----AQAGWAPIE-DWITCPQ-HPSHQRLMALYGRSPEA 197
Query: 533 LVLRSASSSTSLGLVEAGLGISALP 459
+ + S +L +V AG+G++ LP
Sbjct: 198 VAGHAGSLQQALHMVAAGVGVAMLP 222
>UniRef50_Q3DX02 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Chloroflexus aurantiacus
J-10-fl|Rep: Regulatory protein, LysR:LysR,
substrate-binding - Chloroflexus aurantiacus J-10-fl
Length = 304
Score = 33.9 bits (74), Expect = 4.1
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -1
Query: 470 SALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDA 357
+ LP + + P ++GIPLV+P RRT+G++ R +A
Sbjct: 238 TVLPAMVLSGQP--DLVGIPLVDPTPRRTVGLLFRHNA 273
>UniRef50_Q1LCM0 Cluster: Transcriptional regulator, LysR family;
n=2; Cupriavidus|Rep: Transcriptional regulator, LysR
family - Ralstonia metallidurans (strain CH34 / ATCC
43123 / DSM 2839)
Length = 323
Score = 33.9 bits (74), Expect = 4.1
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQN-DWRTLLQRQPTVDRTTAGRQALEAG 534
TPL EP + C +DHPL ++ R G++ L+ W ++ + R L AG
Sbjct: 185 TPLWQEPLAIACAQDHPLRRR---RNVGLAELRELGW--IVASREAYTRQVFDDTFLSAG 239
Query: 533 LV-----LRSASSSTSLGLVEAGLGISALPGLAMPH 441
LV + S S T+L +V + ++ P A+ H
Sbjct: 240 LVPPHPRVESFSFHTNLSVVASSDLLTVAPESAVAH 275
>UniRef50_Q0RSQ6 Cluster: Putative LysR-family transcriptional
regulator; n=1; Frankia alni ACN14a|Rep: Putative
LysR-family transcriptional regulator - Frankia alni
(strain ACN14a)
Length = 334
Score = 33.9 bits (74), Expect = 4.1
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLV 528
PLV++P + HP A AA + + G D+ + P + T A A AG V
Sbjct: 189 PLVDDPLDVALPAAHPYAAAAAVPLEVLGG--EDFISSRAGTPCHEVTHAACAA--AGFV 244
Query: 527 ----LRSASSSTSLGLVEAGLGISALPGLA----MPHAPYSSIIGIPLVEPV 396
R S GL+ AG G+ +P LA P I G+P + P+
Sbjct: 245 PRVRHRCDDYSAIQGLIAAGCGVGLIPRLAKLSSTPRVALRPIAGVPPIRPI 296
>UniRef50_A6WF12 Cluster: Transcriptional regulator, LysR family;
n=2; Actinomycetales|Rep: Transcriptional regulator,
LysR family - Kineococcus radiotolerans SRS30216
Length = 295
Score = 33.9 bits (74), Expect = 4.1
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDR----TTAGRQALE 540
PL+ EP + DHPLA++ +A V+G W ++ + P A R+ L+
Sbjct: 161 PLLTEPLHVALAADHPLARRDRLTVADVAG--ERWVSVHEGFPLAGALDVVAVAARRPLD 218
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
+V R + +V G ++ LP A P ++ PL + + R + + R +
Sbjct: 219 --VVHRINEVFVAAAVVATGDAVALLP--ARTTRPGPGVVLRPLADLGVNRRVDALLRPE 274
Query: 359 AGAASGFK 336
A A G +
Sbjct: 275 ALARRGVR 282
>UniRef50_A4F8I8 Cluster: LysR-family transcriptional regulator;
n=1; Saccharopolyspora erythraea NRRL 2338|Rep:
LysR-family transcriptional regulator -
Saccharopolyspora erythraea (strain NRRL 23338)
Length = 308
Score = 33.9 bits (74), Expect = 4.1
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+++ PL EP + H LA +AA ++ ++ +D+ ++ R R +
Sbjct: 172 LEWVPLRAEPLLAVLHTGHRLAGRAALALSELA--DDDF--VVTRHGYGLRQIFTELSDR 227
Query: 539 AGLVLRSASSS----TSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTL 381
AG R A S T+ GLV AGLG++ LP A+P A + IPL +P RT+
Sbjct: 228 AGFAPRVAFESEEVDTARGLVAAGLGVALLPP-AVPEA-VPGTVEIPL-DPAEHRTI 281
>UniRef50_A2U4P4 Cluster: Transcriptional regulator, LysR family;
n=1; Bacillus coagulans 36D1|Rep: Transcriptional
regulator, LysR family - Bacillus coagulans 36D1
Length = 301
Score = 33.9 bits (74), Expect = 4.1
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDR----TTAGRQALEA 537
L E +L RRDHPL+ + R+A L+N+ R + R+ R + E
Sbjct: 161 LYMEKLMLLFRRDHPLSGQKMIRLA---QLKNE-RFITFREGFSIREILFAACRKSGFEP 216
Query: 536 GLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI-IRRKD 360
+ T GLV +G G++ LP A+ I+ + + + R +G+ I +K
Sbjct: 217 AIAFEGEDMETIKGLVASGTGVAILPEPALLFNLSEEIVKAEISDMELMRPVGVMIPKKR 276
Query: 359 AGAAS 345
AAS
Sbjct: 277 EMAAS 281
>UniRef50_Q67U97 Cluster: Putative uncharacterized protein
P0025H07.14; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0025H07.14 - Oryza sativa subsp. japonica (Rice)
Length = 103
Score = 33.9 bits (74), Expect = 4.1
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 478 SPASTSPNDVEDDALRKTSPASRACRPAVVLSTVGCR-WRSVRQSFCNPLTPAILQAAFL 654
SP+ST+P+ + LR A R C P S VG R WR C PL+ A A+
Sbjct: 25 SPSSTAPSRLAPARLRPARVALRGCSPPGRPSAVGRRPWR------CGPLSTARTPASRR 78
Query: 655 ANGWSRRQGST 687
A RR G++
Sbjct: 79 AAARRRRLGTS 89
>UniRef50_Q9YBE8 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 427
Score = 33.9 bits (74), Expect = 4.1
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = -1
Query: 560 AGRQALEAGLVLRSASSSTSLGLVEAGLGISAL--PGLAMPHAPYSSIIGIPLVEPVIRR 387
AG+ +L A L RS + G+++A +G + + PG P S +I + L++PV R
Sbjct: 108 AGKTSLTAVLANRSLARGIPTGIIDADVGQADIGPPGFVSLSLPGSWVIWLRLLDPVALR 167
Query: 386 TLGII 372
+G I
Sbjct: 168 FVGSI 172
>UniRef50_P39592 Cluster: Uncharacterized HTH-type transcriptional
regulator ywbI; n=4; Bacillus|Rep: Uncharacterized
HTH-type transcriptional regulator ywbI - Bacillus
subtilis
Length = 301
Score = 33.9 bits (74), Expect = 4.1
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG--- 534
+V E +L H LA + C++ + D + R+ V + ++AG
Sbjct: 160 IVKETLMLVVHPSHRLADEKECQLRELK----DEPFIFFREDFVLHNRIMTECIKAGFRP 215
Query: 533 -LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD 360
++ ++ +V A LGI LP + IPLV+PVI L II RKD
Sbjct: 216 HIIYETSQWDFISEMVSANLGIGLLPERICRGLDPEKVKVIPLVDPVIPWHLAIIWRKD 274
>UniRef50_Q89XS0 Cluster: Transcriptional regulatory protein; n=3;
Rhizobiales|Rep: Transcriptional regulatory protein -
Bradyrhizobium japonicum
Length = 326
Score = 33.5 bits (73), Expect = 5.4
Identities = 23/104 (22%), Positives = 44/104 (42%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+D + P V DHPLAKK R+ ++G++ R R+ +
Sbjct: 160 LDMQWVCEVPCVACLAMDHPLAKKKVIRLRDLAGVRLLTMANPYRLRRRVEEALEREGVV 219
Query: 539 AGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPL 408
V+ + +S T++ + + LGI+ + + P ++ PL
Sbjct: 220 PAEVIDTNASLTAIAMAKQSLGIAVVEPVLTSSLPVEGVVTRPL 263
>UniRef50_Q62FI9 Cluster: Transcriptional regulator, LysR family;
n=22; Burkholderia|Rep: Transcriptional regulator, LysR
family - Burkholderia mallei (Pseudomonas mallei)
Length = 282
Score = 33.5 bits (73), Expect = 5.4
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -1
Query: 593 LQRQPTVDRTTAGRQALEAGLVLRSASSSTSLGLVEA----GLGISALPGLAMPHAPYSS 426
L QP+V R G R A +STS+ ++ A GLGISA G +PH
Sbjct: 185 LHPQPSVSRQRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYVIPHGLAKL 244
Query: 425 IIGIP 411
G+P
Sbjct: 245 EAGLP 249
>UniRef50_Q5FUF1 Cluster: Transcriptional regulator; n=1;
Gluconobacter oxydans|Rep: Transcriptional regulator -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 316
Score = 33.5 bits (73), Expect = 5.4
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRD-HPLAKKAACRMAGVSGLQNDWRTLLQRQPTV---DRTTAGR 552
+D +V PF L HPL K+ + +WR +LQ QP + R+ GR
Sbjct: 158 LDAALIVRPPFGLMADMQWHPLVKQDYVMVVPAHTEHENWRQILQTQPFIRYDSRSFGGR 217
Query: 551 --------QALEAGLVLRSASSSTSLGLVEAGLGISALPGL-AMPHAPYSSIIGIPLVEP 399
Q L V+ + T L +V +G S +P + A+ P +I +PL E
Sbjct: 218 TLDRFLKAQGLAPHQVVETEELHTILQMVANNMGCSIVPYIFAVSVVP--NIRVLPLGEH 275
Query: 398 VIRRTLGII 372
I R +G++
Sbjct: 276 RIAREVGVM 284
>UniRef50_Q46U73 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=5; Burkholderiales|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Ralstonia
eutropha (strain JMP134) (Alcaligenes eutrophus)
Length = 313
Score = 33.5 bits (73), Expect = 5.4
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAA-CRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQAL 543
+ + PL+++ FVL H +A+ + R A + + T + +
Sbjct: 159 LHYEPLLSDRFVLLIPAAHAMARGSGPLRWADTASAPHVSMTNPSSVRQYTEWAFLQNRI 218
Query: 542 EAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
V + +T +VE G G++ALP +A I+ L PV R++G++
Sbjct: 219 RFQPVFEAEHLATIAAMVECGFGVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLV 275
>UniRef50_Q46PT5 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Ralstonia eutropha JMP134|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 300
Score = 33.5 bits (73), Expect = 5.4
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Frame = -1
Query: 716 DFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEA 537
D PL+ P + PLA + R S L+ + T RT +Q +A
Sbjct: 158 DRIPLLRHPLGVMVPSSWPLATRK--RDLVWSDLEGQ-PLIAMSHATGMRTLIDQQLHQA 214
Query: 536 GLVLRS----ASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
G+ + A T++GL EAGLG++ +P + PL +PV+ R + +I
Sbjct: 215 GVQVNPRFEVAYLGTAVGLAEAGLGVTVVPAYVGKLMGSDRVRFRPLHKPVVHRQIELIV 274
Query: 368 R 366
R
Sbjct: 275 R 275
>UniRef50_Q3K4C7 Cluster: Transcriptional Regulator, LysR family;
n=19; Pseudomonadaceae|Rep: Transcriptional Regulator,
LysR family - Pseudomonas fluorescens (strain PfO-1)
Length = 320
Score = 33.5 bits (73), Expect = 5.4
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
++F P +N P V R DHPLA R+ + TLL R+P A + +
Sbjct: 161 LEFLPFLNNPIVAVARPDHPLAHMGPLRLQDLEPY-----TLLIREPGSGTRLACEEYFK 215
Query: 539 AGLV-----LRSASSSTSLGLVEAGLGISALPGLAMP-HAPYSSIIGIPLVEPVIRRTLG 378
V AS+ V AGLG++ L A+ ++ +P+ E + R+
Sbjct: 216 EKRVHFTQTQEVASAEAQRECVVAGLGLALLTRHALNLELATGGLVELPVEELPLFRSWC 275
Query: 377 IIRRK 363
+++ K
Sbjct: 276 LVQAK 280
>UniRef50_Q398I3 Cluster: Transcriptional regulator, LysR family;
n=9; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 347
Score = 33.5 bits (73), Expect = 5.4
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 566 TTAGRQA-LEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIR 390
T A R A + +V+R + + LV G+G S LPG + I +PL P IR
Sbjct: 255 TEAFRSAGVTPNVVMRVGDIFSLINLVSGGVGCSLLPGRVRDLFAH-KIALVPLAGPTIR 313
Query: 389 RTLGI 375
+T+G+
Sbjct: 314 QTIGL 318
>UniRef50_Q5EXK6 Cluster: LysR-like regulatory protein; n=11;
Enterobacteriaceae|Rep: LysR-like regulatory protein -
Klebsiella pneumoniae
Length = 331
Score = 33.5 bits (73), Expect = 5.4
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+ + L EP R DHPLA+K+ A +S WR ++ T R + ++
Sbjct: 190 LSYRVLYTEPVCFVARPDHPLAQKSRLSWADLS----PWRWIVWPTGTPIRLSIDNALVD 245
Query: 539 AGLVL-----RSASSSTSLGLVEAGLGISALP-GLAMPHAPYS--SIIGIPLVEPVIRRT 384
G++L SAS + + L+++ +S L LA +A +I+ +P +E + +
Sbjct: 246 NGVMLPENTIESASMNVTSNLLQSSDMVSILSLRLAQRYAAQHQLAILNLPRIEQ--KGS 303
Query: 383 LGIIRRK 363
+G+ RK
Sbjct: 304 VGVFWRK 310
>UniRef50_Q1DBN8 Cluster: Transcriptional regulator, LysR family;
n=2; Cystobacterineae|Rep: Transcriptional regulator,
LysR family - Myxococcus xanthus (strain DK 1622)
Length = 301
Score = 33.5 bits (73), Expect = 5.4
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVD-RTTAGRQALEAGL- 531
L+ E FVL HP A++ ++ +S L N+ L R L AG
Sbjct: 160 LLQERFVLALPARHPRARQ---QVVALSSLANEPFVLFPRHSAPGLHDLVTSMCLGAGFS 216
Query: 530 --VLRSASSSTSL-GLVEAGLGISALPGLAMPHAP 435
+L+ ASS S+ G+VEAGLG++ P + P
Sbjct: 217 PNILQEASSWPSVVGMVEAGLGLTIAPASSQALCP 251
>UniRef50_A4ALQ4 Cluster: Conserved hypotethical protein; n=3;
Actinobacteria (class)|Rep: Conserved hypotethical
protein - marine actinobacterium PHSC20C1
Length = 379
Score = 33.5 bits (73), Expect = 5.4
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +1
Query: 457 PGSAEIPSPASTSPNDVEDDALRKTSPASRACRPAVVLSTVGCRWRSVRQSFCNPLTPAI 636
P SA + S+S +E +A R + PA R V++ +G R L+ +
Sbjct: 7 PDSANLTDVLSSSLQAIEGEANRLSLPAVRHA-VVVLVDGLGIHSLKARAGHARTLSSVL 65
Query: 637 LQAAFLANGWSRRQGSTNGSLTSGVKS 717
+ A + +G+ S SLT+GV++
Sbjct: 66 SKNAVIQSGFPTTTASALASLTTGVRA 92
>UniRef50_A1UCU5 Cluster: Putative uncharacterized protein; n=4;
Mycobacterium|Rep: Putative uncharacterized protein -
Mycobacterium sp. (strain KMS)
Length = 269
Score = 33.5 bits (73), Expect = 5.4
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
Frame = +1
Query: 316 FVVDVSRLKPLAAPASLRRII--PNV-RRITGSTNGIPXXXXXXXXXXXRPGSAEIPSPA 486
F+V V+R A S R ++ P+ R + G+P R E P+P
Sbjct: 66 FIVRVARHHESGARRSNRYLLNHPDAPHRYASAETGLPRSDNGTGPV--RSVDREGPTPT 123
Query: 487 STSPNDVEDDALRKTSPASRACRPAVVLSTVGCRWRSVRQSFCNPLTPAILQAAFLANGW 666
+D D L + S AVVL ++ RWR V L+PAI +AAF A GW
Sbjct: 124 HQRVHD--SDPLNPPAEPSSEPSSAVVLGSLPPRWR-VSNEDARKLSPAI-EAAFAA-GW 178
Query: 667 SRRQGSTN-GSLTSGVKS 717
+ + +T+ S GV++
Sbjct: 179 TSQALATHLSSHPEGVRN 196
>UniRef50_Q2TWV1 Cluster: Polyketide synthase modules and related
proteins; n=1; Aspergillus oryzae|Rep: Polyketide
synthase modules and related proteins - Aspergillus
oryzae
Length = 2253
Score = 33.5 bits (73), Expect = 5.4
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -1
Query: 635 MAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+A VSGL + W L+++ P++D + GRQ LE
Sbjct: 37 LAAVSGLPDYWDLLVKKLPSIDGSFPGRQVLE 68
>UniRef50_Q7U388 Cluster: LysR-FAMILY transcriptional regulator;
n=2; Burkholderiales|Rep: LysR-FAMILY transcriptional
regulator - Bordetella bronchiseptica (Alcaligenes
bronchisepticus)
Length = 304
Score = 33.1 bits (72), Expect = 7.1
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = -1
Query: 677 CRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVLRSASS---- 510
C H LA K A V+ ++ ++ R R + R A E GL RS
Sbjct: 172 CAPGHALAAKRRLAWADVAAHEH----IMLRNAYSVRRSLDRVAAELGLTFRSRIEAGLL 227
Query: 509 STSLGLVEAGLGISALPGLAMPHAPYSSIIGIPL 408
S+ L LV GLGI+ +PG A A + +P+
Sbjct: 228 SSVLNLVGEGLGITVVPGYACGPARQLGLRVLPI 261
>UniRef50_Q72A86 Cluster: Transcriptional regulator, LysR family;
n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
Transcriptional regulator, LysR family - Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB8303)
Length = 300
Score = 33.1 bits (72), Expect = 7.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQ-NDWRTLLQRQPTVDRTTAGRQALEAGL 531
PL +EP + HPL+ + R+ + G + P + R R+ +
Sbjct: 157 PLCDEPLIAVLPEGHPLSGRPCIRLEDLDGSPFIQFEQGFALNPRI-RDACLRRGVSLRE 215
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSII 420
L S+ + + LV AGLG++ +P L + + ++
Sbjct: 216 TLCSSQMAFIISLVAAGLGVALIPRLMLAEGTPAGVV 252
>UniRef50_Q9ZHZ7 Cluster: Rubisco operon transcriptional regulator;
n=3; Bacteria|Rep: Rubisco operon transcriptional
regulator - Thiobacillus denitrificans
Length = 313
Score = 33.1 bits (72), Expect = 7.1
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGL 531
TP+++ P V+ DHPLA + ++ + W L++ + + R R+ E+G+
Sbjct: 161 TPIMDNPIVVLAAPDHPLAHTRKIPLEQLA--KESW--LMREKGSGTRNAIERRFAESGI 216
Query: 530 V----LRSASSSTSLGLVEAGLGISAL 462
L S+ + AGLGISAL
Sbjct: 217 AVHPRLELGSNEAIKQAILAGLGISAL 243
>UniRef50_Q3W4H7 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 226
Score = 33.1 bits (72), Expect = 7.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 454 RP-GSAEIPSPASTSPNDVEDDALRKTSPASRA-CRPAVVLSTVGCRWRSVRQSFCNPLT 627
RP G ++PSP P+ V+ + R +PA +A RPA R RQ+ P+T
Sbjct: 26 RPFGGPQVPSPIGVRPDPVDAEGARAPAPARQAPARPASA-GGASVRQAPARQASARPVT 84
Query: 628 PAILQA 645
+ A
Sbjct: 85 AGAVTA 90
>UniRef50_Q28K72 Cluster: Transcriptional regulator LysR family;
n=1; Jannaschia sp. CCS1|Rep: Transcriptional regulator
LysR family - Jannaschia sp. (strain CCS1)
Length = 296
Score = 33.1 bits (72), Expect = 7.1
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = -1
Query: 554 RQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGI 375
R + + L SA + +S+ V+AGLG+S +P LA+ + +PL + R LG+
Sbjct: 208 RVQVSEAMELNSAEAISSM--VQAGLGVSIVPDLAVTPQDGVRVKRLPLGDDAPSRILGL 265
Query: 374 IRRKD 360
KD
Sbjct: 266 ACHKD 270
>UniRef50_A6SXB4 Cluster: Transcriptional regulator, LysR family;
n=1; Janthinobacterium sp. Marseille|Rep:
Transcriptional regulator, LysR family -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 302
Score = 33.1 bits (72), Expect = 7.1
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Frame = -1
Query: 695 EPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVLRSA 516
+ + + ++H L +K ++ Q +L + P++ RT + G+ L A
Sbjct: 165 DKYAVLMHKEHQLMRKKTITWQDIAATQ----PILLKPPSLIRTYLDQHLARVGITLTPA 220
Query: 515 SSS----TSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
T G+V AG+G++ + +P A + + PVI R L ++ R
Sbjct: 221 YEVALPWTMTGMVRAGVGVAIVTTGVLPVAERMGLELRTISAPVIERELAVLTR 274
>UniRef50_A2W4R0 Cluster: Regulatory protein, LysR; n=8;
Proteobacteria|Rep: Regulatory protein, LysR -
Burkholderia cenocepacia PC184
Length = 317
Score = 33.1 bits (72), Expect = 7.1
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+D T ++N+P +L HPLAKK ++ W + Q++ +
Sbjct: 173 LDSTMVLNDPMLLALPDGHPLAKKKTLSADDLAA--QAWIGVTQQESAPRHGAFVAACAK 230
Query: 539 AG----LVLRSASSSTSLGLVEAGLGISAL 462
AG + + + +LGLV AGLG++ +
Sbjct: 231 AGFSPDISVEATEPLAALGLVAAGLGVTMI 260
>UniRef50_A0VAE5 Cluster: Transcriptional regulator, LysR family
precursor; n=1; Delftia acidovorans SPH-1|Rep:
Transcriptional regulator, LysR family precursor -
Delftia acidovorans SPH-1
Length = 413
Score = 33.1 bits (72), Expect = 7.1
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -1
Query: 530 VLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVI 393
V+ S S T+L LV AGLG+SA+P + +P S + V P I
Sbjct: 333 VIESTSPFTNLQLVRAGLGLSAVPDSTLQASPRSLGVRRVHVTPAI 378
>UniRef50_A0HI59 Cluster: Transcriptional regulator, LysR family;
n=5; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Comamonas testosteroni KF-1
Length = 307
Score = 33.1 bits (72), Expect = 7.1
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLVL 525
L E + +DH LAK A R+ +SG + + T R+ AG +
Sbjct: 162 LERESLIAALPKDHFLAKHTAIRLNDLSG--EAFLMYAEGAATSLRSLVMAACQRAGFIP 219
Query: 524 RSASSSTS----LGLVEAGLGISALPGLAMPHA 438
R +T L LVE+GLG++ +P + +A
Sbjct: 220 RITQEATQVQTILALVESGLGVALVPSVMRRYA 252
>UniRef50_UPI0000D9C680 Cluster: PREDICTED: hypothetical protein;
n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
- Macaca mulatta
Length = 405
Score = 32.7 bits (71), Expect = 9.4
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -1
Query: 605 WRTLLQRQPTVDRTTAGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGL---AMPHAP 435
W + + P ++ + + AG+ + SS SLG+ ++G G S PG+ + P P
Sbjct: 79 WFSAVTPAPALETPRMALEQVRAGMPCKKGGSSESLGVPQSGPG-SGRPGVLAGSGPGPP 137
Query: 434 YSSIIGIPLVEPVIRRTLGIIRRKDAGAASGFKRETST 321
I P ++ +L D G A+ KR +S+
Sbjct: 138 PPGSINSPSLQMAAGSSLASRFMGDWGLAAAEKRHSSS 175
>UniRef50_UPI00006CAF70 Cluster: Tesmin/TSO1-like CXC domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Tesmin/TSO1-like CXC domain containing protein
- Tetrahymena thermophila SB210
Length = 1040
Score = 32.7 bits (71), Expect = 9.4
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 273 DELFCHCV-TSRNCSIRC*CFSFKTACCSGIFTANYSQCSTYNG----FHQWDTNNRRIG 437
++ +C C T CS +C C + S I N +Q + NG +Q+ NN+++
Sbjct: 832 EKKYCECYNTGVKCSDQCKCEGCRNRDPSEIVKINNAQNNPSNGNSSFSNQYSGNNKQVD 891
Query: 438 RMRHCQARKRRNPQSRLHQS 497
+ + + + N QS LH +
Sbjct: 892 QYLNNEELYQHNSQSMLHHN 911
>UniRef50_UPI0000660A93 Cluster: UPI0000660A93 related cluster; n=1;
Takifugu rubripes|Rep: UPI0000660A93 UniRef100 entry -
Takifugu rubripes
Length = 169
Score = 32.7 bits (71), Expect = 9.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 567 SINSRLPLEERTPIIL*PTNSCHSTSCFFGQWM 665
++ SR PL++RTP P+ C CFF +W+
Sbjct: 129 TVYSRQPLQQRTPGF--PSRDCRGNLCFFHRWV 159
>UniRef50_Q4TFP9 Cluster: Chromosome undetermined SCAF4314, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4314,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 202
Score = 32.7 bits (71), Expect = 9.4
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +3
Query: 285 CHCVTSRNCSIRC*CFSFKTACCSGIFTANYSQCSTYNGFHQWDTNNRRIGRMRHCQAR 461
C CV C C C AC SGI T S TY H++ T+ R R + C +R
Sbjct: 132 CVCVCVCVCVCVCVCVYRLWACSSGINTTLRSLWPTYQTSHRFQTSGR--WRTKFCLSR 188
>UniRef50_Q5FRA7 Cluster: Putative transcriptional regulator; n=1;
Gluconobacter oxydans|Rep: Putative transcriptional
regulator - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 308
Score = 32.7 bits (71), Expect = 9.4
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVD-RTTAGRQALEAGLV 528
+V EP V+ R H LAK+A ++ L+++ L Q Q T L AG
Sbjct: 163 IVEEPMVVAVPRTHRLAKEAPAGGLKLAELEDEDFILYQSQYNNGLYKTIVDACLGAGFT 222
Query: 527 LRSASSS----TSLGLVEAGLGISALPGLAMPHAPYSSIIGIPL 408
R +L LV GLGIS +P H ++ IPL
Sbjct: 223 PRIRQKGPQLLAALNLVAGGLGISLVPQSMQQHHA-GQVVYIPL 265
>UniRef50_Q49722 Cluster: Putative uncharacterized protein ML0405;
n=10; Mycobacterium|Rep: Putative uncharacterized
protein ML0405 - Mycobacterium leprae
Length = 394
Score = 32.7 bits (71), Expect = 9.4
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = -1
Query: 560 AGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPHA 438
AG L +G L S + SL V AGLG+ +LP LA HA
Sbjct: 259 AGSSGLLSGESLLSTENLPSLAGVGAGLGLGSLPQLAQLHA 299
>UniRef50_Q47MN3 Cluster: Putative LysR-family transcriptional
regulator; n=1; Thermobifida fusca YX|Rep: Putative
LysR-family transcriptional regulator - Thermobifida
fusca (strain YX)
Length = 314
Score = 32.7 bits (71), Expect = 9.4
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPT---VDRTTAGRQALEAG 534
L+++P VL H LA + + L W T +P+ +DR G G
Sbjct: 166 LLHDPLVLAVPEGHRLADPSI-PVDFAELLDESWVTAPVGEPSRSAIDRLL-GDVGGSPG 223
Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
V T + LV GLGI+A+P LA + Y ++ + +RR + R
Sbjct: 224 AVWEFEGIGTIMSLVARGLGIAAVPALAF-SSSYPGLVHRRIPNAPVRRIYALAR 277
>UniRef50_Q39MW0 Cluster: Transcriptional regulator, LysR family;
n=4; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 317
Score = 32.7 bits (71), Expect = 9.4
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALE 540
+D P + FV R+HPLA++ + + ++ + + + AL
Sbjct: 169 LDTLPYRTDSFVAVVPRNHPLAEQRTVKTLDL--VREPFIAQPVNTTLMFKVNEAAHALG 226
Query: 539 AGLVLRSASSST--SLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRR 366
+ R S +L LV+AGLG++ LP + + + + EP R L + R
Sbjct: 227 ETIRARFTVSGADVALSLVQAGLGVTVLPECMVSMDSHERCAVLHIQEPWAERVLRVGTR 286
Query: 365 KDAGAAS 345
K S
Sbjct: 287 KGKATTS 293
>UniRef50_Q4J012 Cluster: Regulatory protein, LysR:LysR substrate
binding domain; n=2; Proteobacteria|Rep: Regulatory
protein, LysR:LysR substrate binding domain -
Azotobacter vinelandii AvOP
Length = 312
Score = 32.7 bits (71), Expect = 9.4
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Frame = -1
Query: 719 IDFTPLVNEPFVLPCRRDHPLAKKAACRMAGV--SGLQNDWRTLLQRQP-----TVDRTT 561
I+F L+ E +L DHPLA AA R GV + L + R +L R+P +
Sbjct: 157 IEFHRLLVEDMLLTLPVDHPLATDAA-RREGVPLAALARE-RFILVRRPGAPGMYANLIA 214
Query: 560 AGRQA-LEAGLVLRSASSSTSLGLVEAGLGISALP 459
A R A E + T++ LV AG GIS +P
Sbjct: 215 ACRNAGFEPAIAFEVERMLTNVSLVAAGAGISVVP 249
>UniRef50_Q1YDL8 Cluster: Transcriptional regulator, LysR family;
n=1; Aurantimonas sp. SI85-9A1|Rep: Transcriptional
regulator, LysR family - Aurantimonas sp. SI85-9A1
Length = 302
Score = 32.7 bits (71), Expect = 9.4
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = -1
Query: 707 PLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGLV 528
PL E FV+ DH LA + +S ++ + QR+ + +AG V
Sbjct: 160 PLREERFVVALPHDHRLAATDRLHLRDLS--EDGFILFTQRKSPLFYARIIGMCEKAGFV 217
Query: 527 LR----SASSSTSLGLVEAGLGISALPGLAMP-HAPYSSIIGIPLVEPVIRRTLG 378
R + T +GLV AG+G++ +P +A + P + + I P ++ LG
Sbjct: 218 PRVEQYATQIHTMIGLVSAGMGVAIVPEVARSLNIPGVAYVEIADTPPTVQVCLG 272
>UniRef50_Q1GSY1 Cluster: Transcriptional regulator, LysR family;
n=1; Sphingopyxis alaskensis|Rep: Transcriptional
regulator, LysR family - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 300
Score = 32.7 bits (71), Expect = 9.4
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = -1
Query: 710 TPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAGL 531
TPL +EP + DHPL + ++ R + R R +
Sbjct: 155 TPLYDEPLTMFVAADHPLVGRIEVTPDELAAETMIARRSCEFLAATSRFFT-RHGVRPRF 213
Query: 530 VLRSASSSTSLGLVEAGLGISALP-GLAMPHAPYSSIIGIPLVEPVIRRTLGII 372
LRS S L +V AG+GI+ P LA+ I+ + + RR LG+I
Sbjct: 214 ALRSESDERCLRMVAAGIGITTAPVSLAI-----DGIVPLKVAGYDFRRELGLI 262
>UniRef50_A5B470 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 889
Score = 32.7 bits (71), Expect = 9.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 122 KQIICNALSSRQIEDKKNPHSMWGKTGMVSMARKTGFTTGNV 247
K I+ + +++D+++P SMW ++ ++ ++ GF T V
Sbjct: 463 KSIVDKPEADEEMQDREDPSSMWDESNLLKFSKALGFATEGV 504
>UniRef50_A1C9L5 Cluster: Putative uncharacterized protein; n=1;
Aspergillus clavatus|Rep: Putative uncharacterized
protein - Aspergillus clavatus
Length = 838
Score = 32.7 bits (71), Expect = 9.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 457 PGSAEIPSPASTSPNDVEDDALRKTSPASRACRPAVVLSTVG-CRWRSVRQSFCNPLTPA 633
P + IPSP+S P+ + ++ +S S + + +S VG W VR S P+ P+
Sbjct: 279 PSVSPIPSPSSALPSSIPSSSIPSSSIPSSSIPSSSPVSPVGSSSWPPVRPSSLPPIRPS 338
>UniRef50_A2BL07 Cluster: Conserved archaeal protein; n=1;
Hyperthermus butylicus DSM 5456|Rep: Conserved archaeal
protein - Hyperthermus butylicus (strain DSM 5456 / JCM
9403)
Length = 273
Score = 32.7 bits (71), Expect = 9.4
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = -1
Query: 704 LVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRT-LLQRQPTVDRTTAGRQALEAGLV 528
L+ E L R L + + A ++ + W LL + R Q ++ LV
Sbjct: 46 LIREALRLADRVGLNLEAPSPTQFAEIAPSKGSWSLDLLSKLLYAARVAGSPQRVDTQLV 105
Query: 527 LRSASSSTSLGLVEAGLGISALPGLAMPH-APYSSIIGIPLVEPVIRRT 384
+ AS + L ++ G++A G+ + H +PY+ + G PL E + R T
Sbjct: 106 V-GASGESDLDILRLAEGLAA-SGVGIMHFSPYTPVPGTPLAEKIRRPT 152
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,566,694
Number of Sequences: 1657284
Number of extensions: 15236433
Number of successful extensions: 47481
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 45431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47375
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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