Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0731.Seq
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.47 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 292 ASRHATAPFVVDVSRLKPLAAPASL 366
           ASR  T+P  V  S+  P AAP S+
Sbjct: 194 ASRTTTSPTKVKASKASPAAAPRSV 218


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 457 PGSAEIPSPASTSPNDVEDDALRKTSPASRACRP 558
           P   EIPSP  +SP   E  ++  T+P + +  P
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 168 KKTPTACGGRQGWCL 212
           KK PT  GGR  W L
Sbjct: 662 KKIPTPYGGRLVWTL 676


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 168 KKTPTACGGRQGWCL 212
           KK PT  GGR  W L
Sbjct: 662 KKIPTPYGGRLVWTL 676


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 168 KKTPTACGGRQGWCL 212
           KK PT  GGR  W L
Sbjct: 662 KKIPTPYGGRLVWTL 676


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 168 KKTPTACGGRQGWCL 212
           KK PT  GGR  W L
Sbjct: 662 KKIPTPYGGRLVWTL 676


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,956
Number of Sequences: 336
Number of extensions: 3702
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)