Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0731.Seq
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   1.2  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    27   2.0  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    26   4.7  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    26   6.2  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.2  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   8.2  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 388 EHWE*FAVKMPEQQAVLNEKHQQRMEQLRDVT 293
           E+WE   +K+    A   E H+Q  E+L  +T
Sbjct: 58  EYWESLVLKLDHYVAAALENHEQSFEELEKIT 89


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 454 RPGSAEIPSPASTSPNDVEDDALRKTSPASRACRPAVVLSTVGC 585
           +P   E P+P +T P  V+     K +P+    R    L  + C
Sbjct: 390 QPQRVEQPAPQTTQPTQVDTQQAAKPAPSKEKSRKKFHLRLLSC 433


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 463 SAEIPSPASTSPNDVEDDALRKTSPASRACRPAVVLSTVGCRWRSVRQSFCNPLTPAIL 639
           S+ I S  S+  + ++D AL++ SP +   +  +     G  W S+   FCN   PA+L
Sbjct: 55  SSTIRSVISSLLDSLQDKALQQ-SPNTSLSKLLLEDQDFGSLWLSLSFIFCNYWQPAML 112


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 562 VVLSTVGCRWRSVRQSFCNPLTPAILQAAFLANGWS 669
           + +S +  R   +++++ N  TP ++ A+ + +GWS
Sbjct: 263 IPISVLSPRETLLKEAYANRFTPRVMIASNVLDGWS 298


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 26   NHRRRSNRRPTDQPSIRLIHKYSR---YQLTLV*RKQIICN 139
            N   ++ RR  +QP I +I++Y R   Y  ++V R++I  N
Sbjct: 938  NFLEKATRRARNQPLIAIINQYGRVGDYNESMVYRRKIPFN 978


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 514 DALRKTSPAS-RACRPAVVLSTVGCRWRSVRQSFCNPLTPAILQAAFLANGWSRRQGSTN 690
           +A+ K S A   +  PA   S VG   RS RQS   P+     +++       +R+GS  
Sbjct: 114 EAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKSSHSPPSTRKRRGSVG 173

Query: 691 GSLTSGVKS 717
            + T   +S
Sbjct: 174 TTATHTKRS 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,276
Number of Sequences: 5004
Number of extensions: 60632
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)