BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0731.Seq (719 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 1.2 SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 27 2.0 SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 4.7 SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 26 6.2 SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 8.2 SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 8.2 >SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 Brl1|Schizosaccharomyces pombe|chr 3|||Manual Length = 692 Score = 28.3 bits (60), Expect = 1.2 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -2 Query: 388 EHWE*FAVKMPEQQAVLNEKHQQRMEQLRDVT 293 E+WE +K+ A E H+Q E+L +T Sbjct: 58 EYWESLVLKLDHYVAAALENHEQSFEELEKIT 89 >SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosaccharomyces pombe|chr 1|||Manual Length = 439 Score = 27.5 bits (58), Expect = 2.0 Identities = 12/44 (27%), Positives = 19/44 (43%) Frame = +1 Query: 454 RPGSAEIPSPASTSPNDVEDDALRKTSPASRACRPAVVLSTVGC 585 +P E P+P +T P V+ K +P+ R L + C Sbjct: 390 QPQRVEQPAPQTTQPTQVDTQQAAKPAPSKEKSRKKFHLRLLSC 433 >SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 209 Score = 26.2 bits (55), Expect = 4.7 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +1 Query: 463 SAEIPSPASTSPNDVEDDALRKTSPASRACRPAVVLSTVGCRWRSVRQSFCNPLTPAIL 639 S+ I S S+ + ++D AL++ SP + + + G W S+ FCN PA+L Sbjct: 55 SSTIRSVISSLLDSLQDKALQQ-SPNTSLSKLLLEDQDFGSLWLSLSFIFCNYWQPAML 112 >SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 431 Score = 25.8 bits (54), Expect = 6.2 Identities = 9/36 (25%), Positives = 22/36 (61%) Frame = +1 Query: 562 VVLSTVGCRWRSVRQSFCNPLTPAILQAAFLANGWS 669 + +S + R +++++ N TP ++ A+ + +GWS Sbjct: 263 IPISVLSPRETLLKEAYANRFTPRVMIASNVLDGWS 298 >SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces pombe|chr 1|||Manual Length = 1213 Score = 25.4 bits (53), Expect = 8.2 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +2 Query: 26 NHRRRSNRRPTDQPSIRLIHKYSR---YQLTLV*RKQIICN 139 N ++ RR +QP I +I++Y R Y ++V R++I N Sbjct: 938 NFLEKATRRARNQPLIAIINQYGRVGDYNESMVYRRKIPFN 978 >SPCC645.13 |||transcription elongation regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 721 Score = 25.4 bits (53), Expect = 8.2 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Frame = +1 Query: 514 DALRKTSPAS-RACRPAVVLSTVGCRWRSVRQSFCNPLTPAILQAAFLANGWSRRQGSTN 690 +A+ K S A + PA S VG RS RQS P+ +++ +R+GS Sbjct: 114 EAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKSSHSPPSTRKRRGSVG 173 Query: 691 GSLTSGVKS 717 + T +S Sbjct: 174 TTATHTKRS 182 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,962,276 Number of Sequences: 5004 Number of extensions: 60632 Number of successful extensions: 173 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 173 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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