Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0731.Seq
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1052 - 23962374-23963369 33 0.23
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 31 0.92
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 30 1.6
06_03_0273 + 19067566-19067791,19068661-19068938,19069434-19070210 30 2.1
09_03_0215 + 13524418-13524465,13524856-13525171,13525291-135253... 29 2.8
06_03_0428 + 20692616-20692629,20692895-20693717 29 2.8
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210... 29 3.7
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394... 29 4.9
03_04_0029 - 16610182-16611753 29 4.9
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 29 4.9
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 29 4.9
09_02_0447 + 9452850-9454121,9454299-9454325 28 8.6
08_02_1058 + 24001584-24001898,24002391-24002507 28 8.6
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 8.6
>08_02_1052 - 23962374-23963369
Length = 331
Score = 33.1 bits (72), Expect = 0.23
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = -1
Query: 647 AACRMAGVSG------LQNDWRTLLQRQPTVDRTTAGRQALEAGLVLRSASSSTSLGLVE 486
AA A VSG + + W T + P R T GRQ L+A L L S TSL +
Sbjct: 84 AAAEAAAVSGGPAAPSVASWWATTARYHPGAARLTLGRQVLDASLSLGRRLSETSLAALA 143
Query: 485 AGL 477
A L
Sbjct: 144 ARL 146
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 31.1 bits (67), Expect = 0.92
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 709 PHWSTSRSCCLVGVTIHWPKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWK 539
P WS SR CC G I P+ WQ G G + +G L + + KPW+
Sbjct: 158 PWWSPSRWCCPRGSRI--PRS---PWQIRAGIDKQGAAADAGELLSGQVKAVRKPWR 209
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
Frame = +1
Query: 334 RLKPLAAPASLRRIIPNVRRITGSTNGIPXXXXXXXXXXXRPGSAEIPSPASTSPNDVED 513
R KP L+ + N+ I G + + RP S + P++ V
Sbjct: 263 RAKPETIQQRLKAVTGNIVDIVGRSK-LVVKEVPGIMGVRRPSSPALQRPSTRERRPVTR 321
Query: 514 DALRKTSPASRACRPAVVLSTVGCRWRSVRQSF----CNPLTP 630
D+ RK + CRP+ R + +Q+ C P TP
Sbjct: 322 DSSRKAPEVATMCRPSTAERRPATRELAPKQANTVVPCRPSTP 364
>06_03_0273 + 19067566-19067791,19068661-19068938,19069434-19070210
Length = 426
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 468 GASWPGNASCALFFDYWYP-IGGTRYTSN 385
G S P N SC LF W P G YT+N
Sbjct: 69 GGSLPSNGSCDLFHGKWVPDSSGPDYTNN 97
>09_03_0215 +
13524418-13524465,13524856-13525171,13525291-13525352,
13526352-13527063,13527847-13527863
Length = 384
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = -1
Query: 524 RSASSSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIR--RTLGIIRRKDAGA 351
R A +G E GLG + + P + + + +++ V+ R G +D GA
Sbjct: 225 RLAGEGAGVGAGE-GLGAGGVEDGLVEEGPGADELVLVVLQHVVGVGRGGGAPAGRDEGA 283
Query: 350 ASGFKRETSTTNGAVA*RDAMAKKFIVEAIE 258
A G +RE + G V DA + EA+E
Sbjct: 284 ADGGEREAARGGGGVLGEDAAGGEEAEEAVE 314
>06_03_0428 + 20692616-20692629,20692895-20693717
Length = 278
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 457 PGSA-EIPSPASTSPNDVEDDALRKTSPASRACRPA 561
PG+A +P PAS +P DV+ A R + A A PA
Sbjct: 122 PGAAASLPRPASAAPRDVQAAAARAAAMALDAVVPA 157
>02_01_0314 +
2106976-2107658,2107792-2107931,2108367-2108636,
2109938-2110254
Length = 469
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 381 QCSTYNGFHQWDTNNRRIGRMRHCQARKRRNPQ 479
QCS ++G ++D R R H +RR PQ
Sbjct: 225 QCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQ 257
>04_03_1041 -
21938347-21938529,21938618-21938773,21939291-21939408,
21939536-21940203,21941773-21941802
Length = 384
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 460 GSAEIPSPASTSPNDVEDDALRKTSPASRACRPAVVLSTVGCRWRSVRQS 609
G+ + PSP +T DAL T +S R V S + RWR + +S
Sbjct: 24 GAVQTPSPPATDRLSALPDALLHTILSSLKGRQMVQTSVLSKRWRHLWRS 73
>03_04_0029 - 16610182-16611753
Length = 523
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 463 SAEIPSPASTSPNDVEDDALRK-TSPASRA 549
S I SPA++SP+DV + +K SPA RA
Sbjct: 78 SPSIASPAASSPSDVPSSSSKKRKSPAHRA 107
>01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796,
31343927-31344122,31344419-31344602,31344984-31345147,
31345454-31345981,31346530-31346630,31347619-31347634,
31347834-31347941,31348028-31348078,31349059-31349100,
31349442-31349541,31350039-31350256,31350367-31350807,
31350916-31351043,31351131-31351992
Length = 1288
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 349 AAPASLRRIIPNVRRITGSTNGIP 420
A P R +P RRITG NGIP
Sbjct: 1091 AVPIYERGFVPFARRITGHPNGIP 1114
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 682 CLVGVTIHWPKKQLVEWQELVGYKMIGVRS 593
C V IHWP+K E+Q LV K +G+ S
Sbjct: 823 CRCDVLIHWPEK---EFQGLVSLKTLGIVS 849
>09_02_0447 + 9452850-9454121,9454299-9454325
Length = 432
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = +3
Query: 189 GGRQGWCLWQGKQGLLLGT-------*VALLNSFNDELFCHCVTSRNCSIRC*CFSFKTA 347
GGR W L + GLLL + VA F D + C +T R IRC + K
Sbjct: 124 GGRNSWELLDCRGGLLLLSKKRPRFGGVATSRRFTDLVVCEPLTRRYQVIRCPA-NLKFF 182
Query: 348 CCSGIF 365
C G+F
Sbjct: 183 MCLGVF 188
>08_02_1058 + 24001584-24001898,24002391-24002507
Length = 143
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 440 APYSSIIGIPLVEPVIRRTLGIIRRKDAGAASGFKRET 327
+P + +PL V LG+ R + G +S F RET
Sbjct: 5 SPAGGALALPLPSSVAEGALGLGRERGGGGSSCFVRET 42
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 463 SAEIPSPASTSPNDVEDDALRKTSPASRACRPAVVLSTVGCRWRSVRQSFC 615
+A PSP + +SPA+ C A + S+V CR S R S+C
Sbjct: 5 TARSPSPGPGARPGCAVRRSADSSPAASPCDLAALRSSVVCRNASPRASWC 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,088,711
Number of Sequences: 37544
Number of extensions: 427074
Number of successful extensions: 1431
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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