Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0731.Seq
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15908| Best HMM Match : LysR_substrate (HMM E-Value=8.5e-40) 42 5e-04
SB_52211| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_47791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_45515| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 29 3.8
SB_52715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62) 29 5.0
SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24) 28 8.8
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 28 8.8
>SB_15908| Best HMM Match : LysR_substrate (HMM E-Value=8.5e-40)
Length = 296
Score = 41.9 bits (94), Expect = 5e-04
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Frame = -1
Query: 713 FTPLVNEPFVLPCRRDHPLAKKAACRMAGVSGLQNDWRTLLQRQPTVDRTTAGRQALEAG 534
FTP+ + + C ++HPLA ++ W+ L Q + + T+ + EA
Sbjct: 166 FTPIWEDQIGVVCPKEHPLAAESFLH----------WKALRQHRLISNGTSRLLEDSEAS 215
Query: 533 LVLRSASSSTS-----LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIR 369
+L + S + ++EAG G++ LP A P + + IPL +P + R +GI++
Sbjct: 216 PLLGHSQFYVSNMISLIAMLEAGFGVTTLPWYAFPQES-TKLSFIPLADPHVVRRIGIVK 274
>SB_52211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 354 SGIFTANYSQCSTYNGFHQWDTNN---RRIGRMRHCQARKRRNP 476
SG + +S C + HQW+ NN R + R+RH Q + P
Sbjct: 46 SGEYAVQHS-CKVFRPAHQWEDNNQDPRPVIRLRHAQLAEIEGP 88
>SB_47791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 354 SGIFTANYSQCSTYNGFHQWDTNN---RRIGRMRHCQ 455
SG + +S C + HQW+ NN R + R+RH Q
Sbjct: 46 SGEYAVQHS-CKVFRPAHQWEDNNQDPRPVIRLRHAQ 81
>SB_45515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 354 SGIFTANYSQCSTYNGFHQWDTNN---RRIGRMRHCQ 455
SG + +S C + HQW+ NN R + R+RH Q
Sbjct: 46 SGEYAVQHS-CKVFRPAHQWEDNNQDPRPVIRLRHAQ 81
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 279 LFCHCVTSRNCSIRC*CFSFKTACCS 356
+FC C + CS R C+S + ACCS
Sbjct: 142 VFCSCRVAC-CSCRVVCYSCRVACCS 166
>SB_52715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 354 SGIFTANYSQCSTYNGFHQWDTNN---RRIGRMRHCQ 455
SG + +S C + HQW+ NN R + R+RH Q
Sbjct: 46 SGEYAVQHS-CKVFRPAHQWEDNNQDPRPVIRLRHAQ 81
>SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62)
Length = 450
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 592 RSVRQSFCNPLTPAILQAAFLANGWSRRQGSTNG 693
RSV SFC TP + A ++ GW + +TNG
Sbjct: 381 RSVAISFCFRGTPRAIPNASISTGWMTVRVTTNG 414
>SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)
Length = 463
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 223 NRVYYWERELLYSIASTMNFFAIASRHATAPFVVDVSRLKPLAAPA 360
NR+++W LL+ + A + A ++D+S + P A P+
Sbjct: 220 NRLFFWGSVLLFKLNKVFTPMASLDAISAARCLLDLSSISPKAKPS 265
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 457 PGSAEIPSPASTSPNDVEDDALRKTS 534
PGS PSP SP V ALR T+
Sbjct: 545 PGSTTPPSPPPDSPKSVAPPALRSTA 570
>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 826
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 471 FGASWPGNASCALFFDYWYPIGGTRYTSNIGNNSP 367
FG S+PG+ S L Y + I GT + + +++P
Sbjct: 205 FGGSYPGSLSAWLRLKYPHLIHGTTFKGAVASSAP 239
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,479,362
Number of Sequences: 59808
Number of extensions: 474486
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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