Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0731.Seq
         (719 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127156-1|BAC86859.1|  204|Homo sapiens protein ( Homo sapiens ...    30   7.3  
AB002308-1|BAA20769.4| 2388|Homo sapiens KIAA0310 protein protein.     30   7.3  

>AK127156-1|BAC86859.1|  204|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45218 fis, clone BRCAN2019653. ).
          Length = 204

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +1

Query: 535 PASRACRPAVVLSTVGCRWRSVRQSFCNPL-TPAILQAAFLANGWSRRQGSTNG 693
           P SR   PAV     GC W    +S  NP       Q  F+A  WS + G   G
Sbjct: 100 PESRRLLPAVPAPAEGCWWWCWGRSALNPCDRKGRYQKRFIAFSWSGQPGPFEG 153


>AB002308-1|BAA20769.4| 2388|Homo sapiens KIAA0310 protein protein.
          Length = 2388

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 584 QPTVDRTTAGRQALEAGLVLRSASSSTSLGLVEAGLGISALPGLAMPH 441
           QP  D     RQAL++  +  S+ SS  +    A  G S  PGL +PH
Sbjct: 80  QPVTDPFAFSRQALQSTPLGSSSKSSPPVLQGPAPAGFSQHPGLLVPH 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,057,720
Number of Sequences: 237096
Number of extensions: 2230836
Number of successful extensions: 5895
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5892
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)