Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0731.Seq
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z82085-6|CAB04987.1|  259|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 181 QHVGEDRDGVYGKENRVYYWERELLYSIA 267
           +H  EDRD +Y  +NR+ Y+  E  YSIA
Sbjct: 169 EHQYEDRDNLYKTDNRIKYFFNE--YSIA 195


>AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical
           protein C53D5.5 protein.
          Length = 642

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/108 (25%), Positives = 39/108 (36%)
 Frame = +1

Query: 319 VVDVSRLKPLAAPASLRRIIPNVRRITGSTNGIPXXXXXXXXXXXRPGSAEIPSPASTSP 498
           V+D   + PLAA   + R   N  RI      +P           R GS ++       P
Sbjct: 166 VIDAREIAPLAATEEMYRDKWNQSRIGWKAIAVPGELHGLRTEFERFGSGKVEWRQLLKP 225

Query: 499 NDVEDDALRKTSPASRACRPAVVLSTVGCRWRSVRQSFCNPLTPAILQ 642
                D L +  P S A   A+  +    R     ++F NP T  + Q
Sbjct: 226 T---IDLLAEGYPTSHALAKALNQNEHQIRAEPTMKNFINPETQRVFQ 270


>Z82085-6|CAB04987.1|  259|Caenorhabditis elegans Hypothetical
           protein ZK218.7 protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
 Frame = +3

Query: 252 ALLNSFNDELFCHCV-----TSRNCSIRC*CFSFKTACCSGIFTANYSQCSTYN 398
           A++   ND   C+ V      + NC   C   S  T     + TA+   C+TYN
Sbjct: 169 AVIECSNDISICNAVGMQDFVNLNCQKTCGRCSTSTTAAGSVATASSGTCTTYN 222


>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 223 NRVYYWERELLYSIASTMNFFAIASRHA 306
           NRV+YW R  ++  +ST+N       HA
Sbjct: 109 NRVFYWPRGRVWGGSSTLNAMCYVRGHA 136


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
           protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 533 LVLRSASSSTSLGLVEAGLGISALPGLAMPHAPYSS 426
           +VL S  SST  G V+ GL  ++   +  PHA  SS
Sbjct: 732 VVLSSGQSSTDFGPVQPGLTQASTGSVDSPHAGLSS 767


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,828
Number of Sequences: 27780
Number of extensions: 353591
Number of successful extensions: 1003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)