Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0731.Seq
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 403 NPLYVEHWE*FAVKMPEQQAVLNEKHQQRMEQLRDVTQWQ 284
           N L+ E    F +   +QQ    ++HQQ+ +Q + V   Q
Sbjct: 399 NTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQ 438


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 181 QHVGEDRDGVY 213
           QHV EDR+G Y
Sbjct: 774 QHVKEDREGFY 784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 181 QHVGEDRDGVY 213
           QHV EDR+G Y
Sbjct: 770 QHVKEDREGFY 780


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
 Frame = +1

Query: 469 EIPSPASTSPNDVEDDAL-RKTSPASRACRPAVVLSTVGCRWRSVRQSFCNPLTPAILQA 645
           ++P+    +P  V+ + L R   P S       +       WR  R SF  P+    L  
Sbjct: 52  QLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSI 111

Query: 646 AFLANGW 666
             L   W
Sbjct: 112 KMLERIW 118


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 375 YSQCSTYNGF 404
           YSQC T+N F
Sbjct: 186 YSQCVTFNAF 195


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/26 (26%), Positives = 10/26 (38%)
 Frame = +3

Query: 411  WDTNNRRIGRMRHCQARKRRNPQSRL 488
            WD        + HC   +R  P  R+
Sbjct: 1682 WDPRRHMYEELNHCAPNRRCPPPPRM 1707


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 649 KQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKL 536
           K L+E     G K+IG+         + ++L  KP KL
Sbjct: 21  KCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,248
Number of Sequences: 438
Number of extensions: 4067
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)