Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0731.Seq
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila...    32   0.44 
At3g57920.1 68416.m06456 squamosa promoter-binding protein, puta...    29   3.1  
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At4g04070.1 68417.m00576 hypothetical protein low similarity to ...    28   5.4  
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    28   7.2  
At2g37010.1 68415.m04539 ABC transporter family protein contains...    28   7.2  

>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar to
            xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
            [SP|P47990]; contains Pfam profile PF02738 Aldehyde
            oxidase and xanthine dehydrogenase, molybdopterin binding
            domain
          Length = 1361

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 125  QIICNALSSRQIEDKKNPHSMWGKTGMVSMARKTG--FTT 238
            ++ CN L +R+  D+ N H+ W K G+  +  K G  FTT
Sbjct: 1001 KVSCNFLKARREADEFNSHNRWKKRGVAMVPTKFGISFTT 1040


>At3g57920.1 68416.m06456 squamosa promoter-binding protein,
           putative similar to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931677;
           contains Pfam profile PF03110: SBP domain
          Length = 354

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 354 SGIFTANYSQCSTYNGFHQWDTNNRRIGRMRHCQARKRRNPQ 479
           SG+      QCS ++   ++D   R   R   C   +RR PQ
Sbjct: 93  SGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERRRKPQ 134


>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 481 PASTSPNDVEDDALRKTSPASRACRPAVVLSTVGCRWRSVRQSFC 615
           P+S SP+D    ++    P S + RP    S+ G R+   R + C
Sbjct: 28  PSSPSPSDASRSSVDPNRPDSSSSRPGSTPSSSGLRFSKGRCAIC 72


>At4g04070.1 68417.m00576 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           fibrinogen-binding protein [Streptococcus equi]
           GI:3093478
          Length = 728

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = -1

Query: 605 WRTLLQRQPTVDRTTAGRQALEAGLVLRSAS---SSTSLGLVEAGLGIS-ALPGLAMPHA 438
           W T L R   V   T  +  LE   +LR      S+ S   + A L ++ A+P +  P A
Sbjct: 173 WSTNLTRTKEV---TLSQTELELLTLLRRGQTDWSTFSRDRIVAALAVAPAVPAIVPPTA 229

Query: 437 PYSSIIGIPLVEPVIRRTLGII 372
               I  +P +EPV +  L II
Sbjct: 230 QLDPIEEVPRIEPVPQADLPII 251


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar to
            xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
            [SP|P47990], from Calliphora vicina [SP|P08793]; contains
            Pfam profile PF02738 Aldehyde oxidase and xanthine
            dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 125  QIICNALSSRQIEDKKNPHSMWGKTGMVSMARKTG--FTT 238
            ++  N L +R+  D+ N H+ W K G+  +  K G  FTT
Sbjct: 1004 KVSSNFLKTRREADEFNSHNRWKKRGVAMVPTKFGISFTT 1043


>At2g37010.1 68415.m04539 ABC transporter family protein contains
           ABC transporter domain, Pfam:PF00005
          Length = 1063

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 185 CCGGFFYPQFACCLMHC 135
           CC GFF PQ   C++ C
Sbjct: 180 CCEGFFCPQGLACMIPC 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,666,539
Number of Sequences: 28952
Number of extensions: 327236
Number of successful extensions: 1036
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)