Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0729.Seq
         (571 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    30   0.012
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    23   2.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   5.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   5.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   5.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   5.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   5.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   5.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   5.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   5.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   5.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   7.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.8  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 30.3 bits (65), Expect = 0.012
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 408 VTQSYRRLLSPLGNTHMSESIY*QLMILPPQVFCWVQSWSS*QP 277
           V +   R+  P    H+  S      + PPQV C++ SWS  +P
Sbjct: 494 VQEVLNRVRKPTKKLHLKNSPI-SKKVRPPQVLCYITSWSQKRP 536


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 3   CSNCTEKETSHKRRV 47
           CS CTEK+    R++
Sbjct: 75  CSKCTEKQKEGSRKI 89


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 147


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 147


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 147


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 147


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 147


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 53  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 103


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 147


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 147


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 375 AAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAVLLLPL 527
           A+   AD+T S              P   T P STP  +    ++ L  PL
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPL 147


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 457 WSQHQGRLLVEMEFVPLPYCF 519
           WS+  G   + ++  PLP  F
Sbjct: 41  WSEDMGSFSLPLDLEPLPSLF 61


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 462 TAPRSTPGGNGICSTA 509
           TAPRS  GG  +  TA
Sbjct: 45  TAPRSIHGGTTVTITA 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,640
Number of Sequences: 336
Number of extensions: 3393
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)