Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0729.Seq
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    27   2.6  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   2.6  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   3.4  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   4.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.5  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   7.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   7.8  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 99  VESSPRPVEICTDATRYNTRKVKRTTKSHV 188
           ++SSP P+E+    T +  + VK   K H+
Sbjct: 662 LKSSPSPIELTEQETEFVVKVVKHVFKDHL 691


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 539 TASSQRQKQYGSGTNSISTRSRPWCCDHRWYTLL 438
           ++SS       SGT  + T S PW    RW  ++
Sbjct: 7   SSSSGDSSDGSSGTTIVQTNSYPWSAYGRWVVVI 40


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 353 SDMWVFPSGDSKRRYDWVTYENG 421
           S+MWVF S  +K  Y  VTY  G
Sbjct: 103 SEMWVFDSEKNKLDYKAVTYVPG 125


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +1

Query: 106 PLLG--QSRSVQMRPDTTRGR*NVRPSHTSTARLHRERRHMNPQGRARRTA--ALHADPE 273
           PLL   Q    Q++    + + ++     S  R HR+R H + Q R+R  +    H+  +
Sbjct: 138 PLLAIKQQEQKQLQTLMEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDK 197

Query: 274 VRLLRRPALHPAKNLRRQDH 333
               RR   +   N R + H
Sbjct: 198 REHSRRSYRNDRNNWRERTH 217


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 369  SRAAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTPGGNGICSTAV 512
            S +++A+A  TGSL+ +    +   S  + VTA  ST    G  S+ +
Sbjct: 1065 STSSVATASITGSLSSSIATASVTGSPTSSVTAVSSTSSVEGTASSTI 1112


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 63  TDKGQHRQPTSFVESSPRPVEICTDATRYNTR 158
           T+   H+  T F+E  P P +  T  TR +TR
Sbjct: 54  TNVSSHQSATKFIEPEPSPTK-KTKLTRRDTR 84


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 234 SLRVHVPSFSM*PCSRRVTWSYVLPSSCCIGSHLYRSRLAEERTPRTTLAACVVL 70
           S  +  PS S    S   +     PSS  I   L  SRL+ ++ P +T+ A   L
Sbjct: 610 SSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETSRLSTKKLPGSTMKAASAL 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,451
Number of Sequences: 5004
Number of extensions: 52927
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)