Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0729.Seq
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607...    28   4.6  
03_05_0424 + 24107009-24107138,24107381-24107784                       28   4.6  
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831     28   6.0  
02_05_1284 - 35449589-35450125,35450255-35451166,35451298-35451333     28   6.0  

>04_03_0510 -
           16659486-16659564,16659772-16659947,16660464-16660797,
           16661564-16661636,16661780-16661783
          Length = 221

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 551 QRCRTASSQRQKQYGSGTNSISTRSRPWCCDHRWYTLLFGQEFSRFRK 408
           Q+ RT  S  ++Q+GSG       SRP  C      +L G+E   + K
Sbjct: 162 QQTRTLDSHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMK 209


>03_05_0424 + 24107009-24107138,24107381-24107784
          Length = 177

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +1

Query: 34  TRGESD*RTLRTKDNTGSQRRSW--SPLLGQSRSVQMRPDTTRGR*NVRPSHTSTARLHR 207
           TR  S     R  +  G     W  SP   + R     P+TT    + RP+ +    LHR
Sbjct: 96  TRAASQSGAARRGELEGDPAEGWPTSPTQCRHRRPSRPPETTTATPSSRPASSPLGLLHR 155

Query: 208 ER 213
           ER
Sbjct: 156 ER 157


>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
          Length = 512

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 443 ECTSGGHSTKVDSWWKWNLFHC 508
           E  S  HST+    W W+ F C
Sbjct: 416 EAASAAHSTQASEIWAWDTFDC 437


>02_05_1284 - 35449589-35450125,35450255-35451166,35451298-35451333
          Length = 494

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 152 HEEGKTYDQVTRLLQGYIENEGT*TRRDVPGELRHYTLTQ 271
           H  G   D+V R  QGY E          P   RHY LT+
Sbjct: 371 HWCGMQTDKVEREEQGYSEKANVEWESSAPDGFRHYNLTK 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,580
Number of Sequences: 37544
Number of extensions: 409329
Number of successful extensions: 1258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)