Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0729.Seq
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      29   2.7  
SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)                     29   2.7  
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)          28   4.7  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  28   4.7  
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           28   4.7  
SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)                   28   4.7  
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   4.7  
SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)                  27   8.2  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.2  
SB_56420| Best HMM Match : CUB (HMM E-Value=0.45)                      27   8.2  
SB_31682| Best HMM Match : SAP (HMM E-Value=0.031)                     27   8.2  
SB_24821| Best HMM Match : SAP (HMM E-Value=0.031)                     27   8.2  
SB_15631| Best HMM Match : SAP (HMM E-Value=0.031)                     27   8.2  
SB_6951| Best HMM Match : PXA (HMM E-Value=6.2)                        27   8.2  
SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)                 27   8.2  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 3   CSNCTEKETSH-KRRV*LENVTDKGQHRQPTSFVESSPRP----VEICTDATRYNTRKV 164
           C   TE++ +  K    ++N+TD  +H +PT+ V  +  P     EIC D   +N R V
Sbjct: 391 CGGLTEQKLAFAKEHEYIDNLTDVVKHIKPTTIVGVAAVPGAFTEEICRDMASFNDRPV 449


>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 145 DTTRGR*NVRPSHT-STARLHRERR-HMNPQGRARRTAALHADPEVRLLRRPALHPAKNL 318
           +TT  R    P H  ST R  RE   H++   R RR   +H D  +R  R   +H    +
Sbjct: 40  ETTMRRRKEGPIHLDSTMRRRREGPIHLDTTMRRRREGPIHLDSTMRRRREGPIHLDSTM 99

Query: 319 RRQ 327
           RR+
Sbjct: 100 RRR 102



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +1

Query: 145 DTTRGR*NVRPSHTSTARLHRERR--HMNPQGRARRTAALHADPEVRLLRRPALHPAKNL 318
           D+T  R    P H  T    R+    H++   R RR   +H D  +R  R   +H    +
Sbjct: 26  DSTMRRRREGPIHLETTMRRRKEGPIHLDSTMRRRREGPIHLDTTMRRRREGPIHLDSTM 85

Query: 319 RRQ 327
           RR+
Sbjct: 86  RRR 88



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 145 DTTRGR*NVRPSHTSTARLHRERR--HMNPQGRARRTAALHADPEVRLLRRPALHPAKNL 318
           D+T  R    P H  T    R     H++   R RR   +H D  +R  R   +H    +
Sbjct: 54  DSTMRRRREGPIHLDTTMRRRREGPIHLDSTMRRRREGPIHLDSTMRRRREGPIHLDSTM 113

Query: 319 RRQ 327
           RR+
Sbjct: 114 RRR 116


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 369 SRAAIASADTTGSLTKTGELLAKKESVPAVVTA-PRSTP 482
           S +  A+ DTT ++T   E+ AK  + P VVTA P S P
Sbjct: 355 SLSTAATNDTTNNVTTIKEIKAKTSASPPVVTAIPTSIP 393


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -1

Query: 256  VPQFSWHVPAGSCA---FVLDVALQ*TCDLVVRFTFLVLYRV-ASVQISTGRGEDSTNDV 89
            VP F   VP  + +   FVL V    T DL +R  +L  + +  ++     RG++   D+
Sbjct: 1079 VPDFVLSVPDSALSVPDFVLSVPDFLTSDLTLRCLYLTTWCLYLTLCCFPRRGDNKLGDI 1138

Query: 88   GCLCC 74
            GC  C
Sbjct: 1139 GCFIC 1143


>SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)
          Length = 474

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +3

Query: 18  EKETSHKRRV*LENVTDKGQHRQPTS-FVESSPRPVEICTDATRYNTRKVKRTTKSHVYC 194
           E  TS  R     N+ +   H   T     S  R  ++    TR  T    R T+ H + 
Sbjct: 56  EHATSRTRDSRTRNIANTQPHEHATQKHATSRTRDSQLWNSRTRNVTNTRLRNTQHHEHK 115

Query: 195 KATSRTKAHE 224
            ATSRT+  E
Sbjct: 116 HATSRTRDSE 125


>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
          Length = 396

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +2

Query: 5   LKLYGKGNFSQEASLTRERYGQRTT--------QAANVVRGVLSSASRDLYRCDPIQHEE 160
           L+ + K N S E ++T  R   + T        Q    V  V+     DLY C     E 
Sbjct: 239 LERFHKQNTSLELNITELRLKLKATDKEMHQERQKVRDVEAVVKRFKTDLYNCVGFIQEP 298

Query: 161 GKTYDQVTRLLQGYIENE 214
            K  + V  L Q Y+++E
Sbjct: 299 KKLKENVKALYQKYVQDE 316


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +2

Query: 5   LKLYGKGNFSQEASLTRERYGQRTT--------QAANVVRGVLSSASRDLYRCDPIQHEE 160
           L+ + K N S E ++T  R   + T        Q    V  V+     DLY C     E 
Sbjct: 685 LERFHKQNTSLELNITELRLKLKATDKEMHQERQKVRDVEAVVKRFKTDLYNCVGFIQEP 744

Query: 161 GKTYDQVTRLLQGYIENE 214
            K  + V  L Q Y+++E
Sbjct: 745 KKLKENVKALYQKYVQDE 762


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 365  VFPSGDSKRRYDWVTYENGRTLGQKG 442
            +FPS DS  +Y W    +GR L   G
Sbjct: 1000 LFPSRDSNTQYSWSQGRSGRNLSDSG 1025


>SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)
          Length = 256

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 410 YENGRTLGQKGECTSGGHSTKVDSWWKWNLFHCRTAFAFVRMLYDISERFFS 565
           YENG  LG K  C++G H+   D ++   +       +F   +Y+++ R ++
Sbjct: 141 YENGVILGYKITCSAGNHTISKDLYFMNTIARIEGVASFT--VYNVTIRAYT 190


>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 94  RSWSPLLGQSRSVQMRPDTTRGR*NVRPS 180
           RS SP+ GQS S+  R D+T G  +VRP+
Sbjct: 218 RSKSPMPGQSLSLPQRSDSTEGL-SVRPA 245


>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 792

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 357 TC-GCSRAAIASADTTGSLTKTGELLAKKESVPAVVTAPRSTP 482
           TC  C R +   AD T     +G   A  E + A  TAP S P
Sbjct: 162 TCVACPRNSAPEADRTSCRCTSGYFRAANEKITADCTAPPSAP 204


>SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 564 LKNRSEMSYSILTKAKAVRQWNKFHFHQEST 472
           ++N+S  S   LTKA+ V +  KFH     T
Sbjct: 192 MENKSITSLDCLTKAQLVEECRKFHLRSTGT 222


>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
          Length = 439

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -3

Query: 539 TASSQRQKQYGSGTNSISTRSRPWCCDHRWYTLLFGQEFSRFRK*PSRIGACYRRSGTPT 360
           T + Q+    G G+  IS   +   CD+ W   +    F+  R   ++I  C       T
Sbjct: 71  TCAVQKCDGCGHGSCQISAGKKSCTCDYGWLNNVGDASFTPGRGPCTKIWKCTEPCVYGT 130

Query: 359 CPS 351
           CPS
Sbjct: 131 CPS 133


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 255  CRSSPGTSLRVHVPSFSM*PCSRRVTWSYVLPSS 154
            C    GTSL +HV      PC+R+   S  LP S
Sbjct: 2218 CGGGCGTSLVIHVDDHKYIPCNRKRWISRDLPES 2251


>SB_56420| Best HMM Match : CUB (HMM E-Value=0.45)
          Length = 1017

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 558 NRSEMSYSILTKAKAVRQWNKFH 490
           N++ + Y I  ++K+ R+W K+H
Sbjct: 275 NKNTVEYKIWLESKSYREWEKYH 297


>SB_31682| Best HMM Match : SAP (HMM E-Value=0.031)
          Length = 158

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 564 LKNRSEMSYSILTKAKAVRQWNKFHFHQEST 472
           ++N+S  S   LTKA+ V +  KFH     T
Sbjct: 44  MENKSITSLDCLTKAQLVEECRKFHLRSTGT 74


>SB_24821| Best HMM Match : SAP (HMM E-Value=0.031)
          Length = 173

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 564 LKNRSEMSYSILTKAKAVRQWNKFHFHQEST 472
           ++N+S  S   LTKA+ V +  KFH     T
Sbjct: 1   MENKSITSLDCLTKAQLVEECRKFHLRSTGT 31


>SB_15631| Best HMM Match : SAP (HMM E-Value=0.031)
          Length = 158

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 564 LKNRSEMSYSILTKAKAVRQWNKFHFHQEST 472
           ++N+S  S   LTKA+ V +  KFH     T
Sbjct: 44  MENKSITSLDCLTKAQLVEECRKFHLRSTGT 74


>SB_6951| Best HMM Match : PXA (HMM E-Value=6.2)
          Length = 284

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 558 NRSEMSYSILTKAKAVRQWNKFH 490
           N++ + Y I  ++K+ R+W K+H
Sbjct: 30  NKNTVEYKIWLESKSYREWEKYH 52


>SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)
          Length = 273

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 564 LKNRSEMSYSILTKAKAVRQWNKFHFHQEST 472
           ++N+S  S   LTKA+ V +  KFH     T
Sbjct: 192 MENKSITSLDCLTKAQLVEECRKFHLRSTGT 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,226,000
Number of Sequences: 59808
Number of extensions: 475868
Number of successful extensions: 1514
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)