Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0729.Seq
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z69788-5|CAD44117.1|  314|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    27   7.2  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    27   7.2  
U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine rece...    27   9.5  

>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/58 (34%), Positives = 23/58 (39%)
 Frame = +1

Query: 76  NTGSQRRSWSPLLGQSRSVQMRPDTTRGR*NVRPSHTSTARLHRERRHMNPQGRARRT 249
           N G  RRSWS    +SRS    P   R R   R       R    RR    + R RR+
Sbjct: 392 NGGMNRRSWS--RSRSRSRSRSPPRRRSRSRSRTRDRRRPRRSNSRRRSRSRDRQRRS 447


>Z69788-5|CAD44117.1|  314|Caenorhabditis elegans Hypothetical
           protein F09A5.4d protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 183 VTWSYVLPSSCCIGSHLYRSRLAEERTPRT-TLAACVVLCP*RSLVRLASCEKFPFPYNL 7
           V +S+  PSS    S L RSR ++ERT  T T  A V     R   R+AS      P   
Sbjct: 17  VYYSFYFPSSSSSSSFLPRSRRSKERTATTGTGGAAVASAADRMSKRVASASLAVRPQAK 76

Query: 6   SS 1
           SS
Sbjct: 77  SS 78


>U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical
           protein EGAP2.1 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 386 KRRYDWVTYENGRTLGQKGECTSGGHSTKVDSWWKWNLFHCRTAFAFVRM 535
           K  Y+W      RT  ++G+C+S   S K  SW+++     +T F+F+ M
Sbjct: 108 KNCYEW----RCRTKDKRGDCSSC--SIKFGSWFEYTKLSFKTIFSFLIM 151


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 227 RRDVPGELRHYTLTQRYGCYDDQLCTQQKTCGG 325
           RR   G+ RH   T R      + CTQ +TC G
Sbjct: 770 RRKARGKARHEATTARLYSKPGESCTQGQTCVG 802


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 227 RRDVPGELRHYTLTQRYGCYDDQLCTQQKTCGG 325
           RR   G+ RH   T R      + CTQ +TC G
Sbjct: 867 RRKARGKARHEATTARLYSKPGESCTQGQTCVG 899


>U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein51 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 461 HSTKVDSWWKWNLFHCRTAFAFVRMLYDI 547
           HS K    +KW+LFH +  F  + + Y I
Sbjct: 57  HSPKYMKEFKWHLFHLQFWFLLLTIFYSI 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,349,096
Number of Sequences: 27780
Number of extensions: 319404
Number of successful extensions: 1013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)