Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0729.Seq
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 479 SRPWCCDHRW 450
           S  W C+HRW
Sbjct: 375 SNGWICEHRW 384



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +2

Query: 467 TKVDSWW 487
           TK+D+WW
Sbjct: 400 TKIDNWW 406


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 459 VTAPRSTPGGNGICSTAVLLLPL*GCCTTSLNDSSA 566
           + AP S   G      A +L+   GC +T LN++ A
Sbjct: 282 LNAPWSYMSGEKANEVATILVDDCGCNSTMLNENPA 317


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 459 VTAPRSTPGGNGICSTAVLLLPL*GCCTTSLNDSSA 566
           + AP S   G      A +L+   GC +T LN++ A
Sbjct: 282 LNAPWSYMSGEKANEVATILVDDCGCNSTMLNENPA 317


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 63   TDKGQHRQPTSFVESSP 113
            T +GQ RQ + F +SSP
Sbjct: 1243 TLRGQERQRSLFKDSSP 1259


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 294 WSS*QPYLWVSV*CRSSPGTSLRVHVPSFSM*PCSRRVTWSY 169
           WS      +V + C   PG   R + P+F   P  R  +  Y
Sbjct: 393 WSRDFRRAFVRILCACCPGRVRRRYQPAFRCKPSQRFASGRY 434


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 213 KAHEPAGTCQE 245
           K HE  GTCQ+
Sbjct: 2   KEHEATGTCQK 12


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 131 YRCDPIQHEEGKTYDQVTRLLQGYIENEGT*TRRDVPGE 247
           + C   Q  + K   Q     QG + +E     RD+P E
Sbjct: 610 FNCTQYQIRDHKDVTQCISCRQGTVPDETHSACRDIPEE 648


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,837
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)