Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0729.Seq
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44850.1 68415.m05584 expressed protein                             29   2.9  
At5g51000.1 68418.m06323 F-box family protein contains F-box dom...    28   3.8  
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    28   5.0  
At1g12880.1 68414.m01496 MutT/nudix family protein similar to di...    28   5.0  
At4g30080.1 68417.m04278 transcriptional factor B3 family protei...    27   6.7  
At4g07450.1 68417.m01143 hypothetical protein includes At2g05890...    27   6.7  
At3g28010.1 68416.m03497 hypothetical protein contains Pfam prof...    27   6.7  
At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    27   6.7  
At1g07550.1 68414.m00808 leucine-rich repeat protein kinase, put...    27   6.7  
At5g04670.1 68418.m00475 expressed protein BRL protein, Homo sap...    27   8.8  
At1g04830.1 68414.m00479 RabGAP/TBC domain-containing protein lo...    27   8.8  

>At2g44850.1 68415.m05584 expressed protein 
          Length = 400

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 56  ERYGQRTTQAANVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQGYIENEG 217
           +R  QR  + A+ +R V+    R    CD ++    K  D++ RLL+   EN G
Sbjct: 318 QRISQRLARGADSLRIVIHGTPRQW--CDELRGWIRKEKDELVRLLKAETENSG 369


>At5g51000.1 68418.m06323 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 70  KDNTGSQRRSWSPLLGQSRSVQMRPDTTRGR*NVRPSHTSTARLH 204
           KDN  S+   W+P LGQ+R +Q R ++ + R   R +H    R +
Sbjct: 112 KDN--SKLMVWNPYLGQTRWIQPRNNSHKHRPAGRFNHRPAGRFY 154


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 374 SGDSKRRYDWVTYENGRTLGQKGECTSGGHSTKVDSWWKWNLFHCR 511
           +GD    Y   T +   T    G+C +    + +D+ W W  F CR
Sbjct: 257 TGDDDGDYPRQTIKEVLTFSDVGKCKTVCTVSAIDTDWPWYYFCCR 302


>At1g12880.1 68414.m01496 MutT/nudix family protein similar to
           diphosphoinositol polyphosphate phosphohydrolase [Homo
           sapiens] GI:3978224; contains Pfam profile PF00293:
           NUDIX domain
          Length = 203

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 248 VLLARPCGFMCLRSRCSLAVDV*LGRTFYLPRVVSGRICTDL-DWPRRGLHERRWLPV 78
           +L   P G    RS+ S   D  LG       + + ++  +L DWP R   ERRWL V
Sbjct: 91  ILRELPLGVWEFRSKSSTVEDECLGGC--KGYMFALKVTEELEDWPERKNRERRWLTV 146


>At4g30080.1 68417.m04278 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain
          Length = 670

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 317 CGGRIINCQYIDSDMWVFPSGDSKRRYDWVTYEN 418
           C G ++    ++S ++ FP G ++  YD V + N
Sbjct: 24  CAGGMVRMPPMNSKVFYFPQGHAENAYDCVDFGN 57


>At4g07450.1 68417.m01143 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 439

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 374 SGDSKRRYDWVTYENGRTLGQKGECTSGGHSTKVDSWWKWNLFHCR 511
           +GD    Y   T ++  T    G+C +    + +D+ W W  F CR
Sbjct: 186 TGDDDGDYPRQTIKDVLTSSDVGKCKTVCTVSAIDTDWPWYYFCCR 231


>At3g28010.1 68416.m03497 hypothetical protein contains Pfam profile
           PF03778: Protein of unknown function (DUF321)
          Length = 261

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 320 GGRIINCQYIDSDMWVFPSGDSKRRYDWVT 409
           GG+II  +++   +WV+ S    R Y ++T
Sbjct: 37  GGKIIGLRFLAGKLWVYVSAGKSRVYIFLT 66


>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
           identical to SP|Q42510; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1451

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 372 GNTHMSESIY*QLMILPPQVFCWVQSWSS*QPYLWV 265
           G+  +  S+   L  L  QVF W Q W +  P L++
Sbjct: 59  GDDQLEHSLIQSLKALRKQVFSWNQPWHTISPMLYL 94


>At1g07550.1 68414.m00808 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 864

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 531 LTKAKAVRQWNKFHFHQESTLVL*PPLVHSPFW-PRVLP 418
           + +  ++R +N+F+F   +  +  P  VH   W P +LP
Sbjct: 185 IAQTGSLRNYNRFYFTDSNNYIRYPQDVHDRIWVPLILP 223


>At5g04670.1 68418.m00475 expressed protein BRL protein, Homo
           sapiens, EMBL:AF005067
          Length = 766

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -3

Query: 527 QRQKQYGSGTNSISTRSRPWCCDHRWYTLLFGQEFSRFRK*PSRIGA 387
           +R+++     +S+ T +  W C+  W+  +FG      R+   R+ +
Sbjct: 146 RRRRKLSQRVSSVLTLTVDWSCEDCWFLTVFGLAMRYIRREELRLSS 192


>At1g04830.1 68414.m00479 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 448

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 491 ISTRSRPWCCDHRWYTLLFGQEFSRF 414
           I+T+  P     RW TLL  QEFS F
Sbjct: 352 ITTKVNPQFYAFRWITLLLTQEFSFF 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,578,878
Number of Sequences: 28952
Number of extensions: 299560
Number of successful extensions: 911
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)