Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0728.Seq
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    25   0.61 
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   3.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.6  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 127 EIRRAVGLSKREITSRHQRTDTDQNFL 207
           ++RR V  +KR+++S H+ T T +N L
Sbjct: 89  KLRREVEKAKRDLSSVHKTTLTIENLL 115


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 603 KTRYACMKAGVKRRTATPLFIGRFILLRFV 692
           K  Y  ++ G + +T   +F   FILLRF+
Sbjct: 374 KLLYNVLRFGAESQTINFMFSFGFILLRFL 403



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 2  RLIAITPSAKINKPTR 49
          +  AITPS+  +KPT+
Sbjct: 14 KFFAITPSSIYDKPTK 29


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 157 REITSRHQRTDTDQNFLYAR 216
           R + + HQR + ++ F Y+R
Sbjct: 160 RVVYTDHQRVELEKEFYYSR 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,999
Number of Sequences: 336
Number of extensions: 3557
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)