Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0728.Seq
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    28   1.5  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   2.0  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    27   3.5  
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   8.2  

>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 332 WTAFYFLQSLLINLGLGYPFSLLYTARLRLFCFCYG*HCLAYKKFWSVSVRWWRLVI 162
           W      Q++  + G  +P+SL     +      +  H +A+K  +S S RWW  V+
Sbjct: 218 WITLRLFQAVDSHAGYDFPWSLNKFLPIWAGADHHDYHHMAFKDNFSSSFRWWDAVL 274


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 405 TPCAYPGVKGQYLQECVKSGK 467
           T    P V  QYL +C+KSGK
Sbjct: 335 TSLGIPLVSSQYLTDCIKSGK 355


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 296 NLGLGYPFSLLYTARLRLFCFCYG 225
           N+G+G  FS+L+++RL   C   G
Sbjct: 157 NIGIGKDFSILHSSRLDSMCLFLG 180


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 488 QYTQGCKR*SEPPFRSTTDEQI--FCEGDCKSDKKWGFSDQNALCLHESRSEAAYRDAAI 661
           +YTQ  +R  +   R+ TDEQI  F E + K +  W    +  L   E R +A  ++  +
Sbjct: 45  EYTQSVERYPDGTIRTLTDEQILWFRESE-KRELMWKKEKEQLLKEKELRQKALDKERMV 103

Query: 662 YRK 670
             K
Sbjct: 104 SSK 106


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 197 WSVSVRWWRLVISLLLRPTARLISIHCWHCTPPIWKSRPKS 75
           W V  R     +S  ++   R I IH W  +P +   RP S
Sbjct: 536 WMVDARDHMWNVSRAIKNAKRCIMIHGWWLSPELQMRRPYS 576


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 524 PFRSTTDEQIFCEGDCKSDKKWGFSDQNALCLHESRSEAAYRDA 655
           P RS    QI CE     D  +   + +   +H    + AY DA
Sbjct: 323 PLRSQNVSQIICEFYDTRDASFALDELDGRIIHNCCLQVAYYDA 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,316
Number of Sequences: 5004
Number of extensions: 59834
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)