Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0728.Seq
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    30   1.6  
05_02_0141 - 7049557-7050333,7050522-7050557                           28   8.5  

>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/65 (33%), Positives = 36/65 (55%)
 Frame = -1

Query: 207 QKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIF 28
           Q +L+G  S+V  C F FA+A  A N   L ++  T +  + E++   P Y++   L  +
Sbjct: 137 QNILIGKGSVVKLCDFGFARAMSA-NTVVLRSIKGTPLYMAPELVREQP-YNHTADL--W 192

Query: 27  ALGVI 13
           +LGVI
Sbjct: 193 SLGVI 197


>05_02_0141 - 7049557-7050333,7050522-7050557
          Length = 270

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 600 SEKPHFLSDLQSPSQKICSSVVDLNGGSLYLLQPCVYCGSRMRTPFHSSRTLAG 439
           S  P  + DL SP+  + S+  +   G+++ L+  ++ GS+M    H +R  AG
Sbjct: 36  SPMPGAIRDLISPASSVGSASKEDTVGNVFFLEKDLFPGSKM--TLHFTRATAG 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,769,307
Number of Sequences: 37544
Number of extensions: 421223
Number of successful extensions: 1004
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)