Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0728.Seq
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37145| Best HMM Match : ig (HMM E-Value=8e-07)                      31   0.93 
SB_10282| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 

>SB_37145| Best HMM Match : ig (HMM E-Value=8e-07)
          Length = 323

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   RLIAITPSAKINKPTR*LYHGKIVRISVDSSILVECNAS 118
           R I +  +A+ N P    Y G ++ ++  S +++ECNA+
Sbjct: 56  RFIDLRITARCNVPVTSHYQGSVMNVAEGSEVMLECNAT 94


>SB_10282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 221 HCLAYKKFWSVSVRWWRLVIS 159
           HC + +KF S+  RWW +V+S
Sbjct: 125 HCTSDRKFLSMRARWWYIVVS 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,740,935
Number of Sequences: 59808
Number of extensions: 499326
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)