Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0728.Seq
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50230.1 68414.m05632 protein kinase family protein contains ...    29   3.1  
At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplas...    29   4.1  
At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplas...    29   4.1  
At2g46880.1 68415.m05853 calcineurin-like phosphoesterase family...    28   7.1  
At4g13970.1 68417.m02161 expressed protein                             27   9.4  

>At1g50230.1 68414.m05632 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 269

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = -1

Query: 207 QKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIF 28
           Q +L+G  S+V  C F FA+A  + N   L ++  T +  + E++   P Y   V L  +
Sbjct: 131 QNILIGAGSVVKLCDFGFARAM-STNTVVLRSIKGTPLYMAPELVKEQP-YDRTVDL--W 186

Query: 27  ALGVI 13
           +LGVI
Sbjct: 187 SLGVI 191


>At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplast,
           putative strong similiarity to chloroplast
           NADP-dependent malate dehydrogenase (EC 1.1.1.82)
           SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
           SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
           {Flaveria bidentis}, [Flaveria trinervia] GI:726334,
           SP|P17606I {Sorghum bicolor}; contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 442

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 233 CYG*HCLAYKKFWSVSVRWWRLVISLLLRPTARLISIH 120
           CYG  CL Y        R W+ +I++ +   A +IS H
Sbjct: 76  CYGVFCLTYDLKAEEETRSWKKLINIAVSGAAGMISNH 113


>At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplast,
           putative strong similiarity to chloroplast
           NADP-dependent malate dehydrogenase (EC 1.1.1.82)
           SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
           SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
           {Flaveria bidentis}, [Flaveria trinervia] GI:726334,
           SP|P17606I {Sorghum bicolor}; contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 443

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 233 CYG*HCLAYKKFWSVSVRWWRLVISLLLRPTARLISIH 120
           CYG  CL Y        R W+ +I++ +   A +IS H
Sbjct: 77  CYGVFCLTYDLKAEEETRSWKKLINIAVSGAAGMISNH 114


>At2g46880.1 68415.m05853 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 401

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -3

Query: 274 SVCSTPLVYGYFAFAMANIASRTKSSGRCQFAGGGLLFPFCSGLRRA*FQYIAGIALHQY 95
           S CS P+  G+F      +  R +  G   F+G   +  FC+ L      Y  G   H Y
Sbjct: 278 STCSPPINSGFFT----KLVERGEVKG--VFSGHDHVNDFCAELHGINLCYAGGAGYHGY 331

Query: 94  GRV 86
           G+V
Sbjct: 332 GQV 334


>At4g13970.1 68417.m02161 expressed protein
          Length = 663

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 470 PLSTLHALLQVLTLDARVSTWRLLR*WHMNLTLKESLVTRSRV 342
           P + + A+  V       S WRL   WH N+ +K    T++RV
Sbjct: 299 PFADIIAIRDVFQCPVLFSFWRLRHAWHKNI-IKRCRETKTRV 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,778
Number of Sequences: 28952
Number of extensions: 320704
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)