Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0727.Seq
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.7
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 27 2.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.0
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.0
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 3.0
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 6.9
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 25 9.1
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 25 9.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.1
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 1.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 355 CSAGRVCEINEHGDAMCNCIKDC 423
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +2
Query: 308 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 487
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 488 AKY 496
++Y
Sbjct: 184 SQY 186
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Frame = +2
Query: 272 LTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTR---QTP 442
L + S S T S T A S + +++ S N+ T S ++ + TP
Sbjct: 195 LASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTP 254
Query: 443 ----DAWCAQTSTKPGNRIAKYTASDLMP 517
++ A TS + A+Y S L+P
Sbjct: 255 LTSSNSTTAATSASATSSSAQYNTSSLLP 283
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 209 IEHGMSESLDEKRYHGQK*P-ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKST 385
+ ++++ + + YH P + +TF+ +L R+ K +W L S+ + V K+T
Sbjct: 275 VSRSLNDATNMETYHWSPFPPQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKAT 332
Query: 386 NTET 397
ET
Sbjct: 333 LLET 336
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 526 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 633
LI + +N T F + E+ CL LK + + SP+
Sbjct: 82 LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 435 CLVGTVLDAVTHGVSVFVDFADT-SC 361
CL+ + LD +T G+S F++ D SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 276 VNSGYFCPWYRFSSKL 229
+NSG CPWY + KL
Sbjct: 635 LNSGISCPWYGTNVKL 650
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 294 DLVEKVVNSGYFCPWYRFSSKLSDIPCSMCSASEMS 187
DL+E++ N+ YF P Y L D + A E +
Sbjct: 419 DLIERIKNTPYFAPIYDELDSLLDASTFVGRAPEQT 454
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 572 ILDLNVVVLRTTALIRVVEA*DRWRYTSQSDCQVSLKF 459
+L L +V+ T I + E W Y +++ V LKF
Sbjct: 2339 LLRLEIVIKNATIFISIFEETGDWPYYIKNESGVLLKF 2376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,784
Number of Sequences: 5004
Number of extensions: 44137
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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