Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0727.Seq
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0862 + 28353235-28354431 30 1.3
11_06_0344 + 22540436-22540737,22541304-22543545 30 1.8
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 29 2.3
03_02_0368 + 7840665-7841975 29 2.3
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 29 2.3
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 3.1
04_03_0094 - 11113279-11114469 29 4.1
03_02_0520 + 9092020-9092079,9092253-9093047 29 4.1
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 5.4
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 28 5.4
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 7.1
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 28 7.1
06_01_0985 - 7646772-7647451,7647957-7648107 28 7.1
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 7.1
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 7.1
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191... 28 7.1
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 27 9.4
02_05_0088 + 25712753-25713076,25713168-25713261,25713646-257137... 27 9.4
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 27 9.4
>03_05_0862 + 28353235-28354431
Length = 398
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 528 QSCRGIRSLAVYFAIRLPGFVEVCAH 451
+ C G+R VYFA+ L G VCA+
Sbjct: 335 RECPGLRPSTVYFAVDLAGETRVCAY 360
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/98 (23%), Positives = 43/98 (43%)
Frame = +1
Query: 337 PCLKVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRSYA 516
PC+ + +G + E+ + D + + P E + + F + + D + R +
Sbjct: 233 PCVAAYLPSG-IRELKQVEDTLSPSYDNLPCELRLLSLYMSTFPQGYVIDKHLLI-RKWK 290
Query: 517 STTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSP 630
+ LI+ T +S ERAE+C + L RC+ P
Sbjct: 291 AEGLIAV-----HTLQSGFEERAEECFSQLVQRCIIRP 323
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 408 LHQGLSLRDRLQTHGVHKLQRNLA---IGLRSIPPAILCLDNSDQCRGPQYH--HVQIEY 572
L G R +L T H+L+ N + +G P LCL S CRG H V+ +
Sbjct: 625 LPAGCPCRGQLLTMD-HRLEENASGGEVGPLGCWPGGLCLSRSIGCRGAISHVDQVKRQR 683
Query: 573 YGTCREMP 596
+ CR++P
Sbjct: 684 HAGCRDLP 691
>03_02_0368 + 7840665-7841975
Length = 436
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 466 NETWQSDCEVYRQRSYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVA 636
+E W+ +R A+T + TT K S+TE E L L+AR L +P A
Sbjct: 121 SEQWRLAAADLSRRLAAATRTRDEALEETTRLKHSLTE-LEMKLARLEARVLPTPTA 176
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 438 LQTHGVHKLQRNLAIGLRSIPPAILCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEM 617
L + V +L+ + G +P I+ D++ C P + ++ +Y TC C+E
Sbjct: 440 LSSDEVKRLKWSCMFGEFEVPAEIIA-DDTLVCHSPSHKPGRVPFYVTCSNRLACSEVRE 498
Query: 618 SDF 626
DF
Sbjct: 499 FDF 501
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 346 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 480
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>04_03_0094 - 11113279-11114469
Length = 396
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -2
Query: 549 IADHGTDQSCRGIRSLAVYFAIRLPGFVEVCAHHASGVCL 430
IAD +Q C ++ L V + RL F +C HHAS V L
Sbjct: 211 IADLTLEQ-CPSVKRLVVA-SPRLDSFAMICCHHASHVVL 248
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 217 VLDVFSLRDVPAAELLRRWTFSSR 146
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 332 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 475
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 501 PAILCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTE 608
PA + D S +C P++ ++ +Y TC C+E
Sbjct: 494 PAEVLADGSLRCYAPEHQSGRVPFYVTCSNRIACSE 529
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -2
Query: 402 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 259
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = +1
Query: 394 DAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRSYASTTLISAVVRNTTTFKSSI 573
DA+ ++ P+ D R + W S Y R+ A+TT+ + TT S
Sbjct: 153 DAVARRVRQRPHRLDDER------SSAWASAQHTYPARTTAATTIDDDDDNDLTTMSSES 206
Query: 574 TERAEKCLTALKARCLTSPVA 636
+ ++ ++ L+ +T+ VA
Sbjct: 207 EDDGDRRISRLRLPPVTARVA 227
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 217 VLDVFSLRDVPAAELLRRWTFSSR 146
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 240 SSKLSDIPCSMCSASEMSPRPSFSDVG 160
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 217 VLDVFSLRDVPAAELLRRWTFSSR 146
VLD+ ++ +PA +L+RWT +R
Sbjct: 196 VLDLMNIESLPAQYILKRWTREAR 219
>01_02_0070 -
10817675-10818024,10818228-10818893,10819094-10819124,
10820038-10820164,10820279-10820736
Length = 543
Score = 27.9 bits (59), Expect = 7.1
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Frame = -2
Query: 480 LPGFVEVCAHHASGVCLVGTVLD-AVTHGVSVFVDFADTSCAAVDFQARVFHVDFFVFIL 304
+P V AH +G+ G VL + G D A V R F +D F+
Sbjct: 32 IPISVAAAAHAQAGLGRTGPVLGFCIADGPETACDVAQQDGYTVTHSLRRFSLDPFLSSS 91
Query: 303 FIRDLVEKVVNSGYFCPWYRFSSKLSDIPC----SMCSASEMSPRP 178
+R K + G S S +P S CSAS +SP P
Sbjct: 92 SVRRRQGKWSHRGCGGGGAAASGASSLLPLPPVRSSCSASHISPNP 137
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 217 VLDVFSLRDVPAAELLRRWTFSSR 146
+LDV +++ VP +L+RWT ++
Sbjct: 319 ILDVNNIKSVPQQYILKRWTIDAK 342
>02_05_0088 +
25712753-25713076,25713168-25713261,25713646-25713767,
25714005-25714127,25714471-25714575,25714673-25714714
Length = 269
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 197 EAEHIEHGMSESLDEKRYHGQK*PE-LTTFSTRSLMKRMKTKKSTWK 334
+ E I G LDE ++HG P+ L T R KR++ +S WK
Sbjct: 152 KVESIASGKPAPLDELQFHGVHNPDLLKTVIIREASKRIQEHQS-WK 197
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -1
Query: 217 VLDVFSLRDVPAAELLRRWTFSSR 146
+LDV +++++P +L+RWT ++
Sbjct: 365 ILDVNNIKEIPKQYILQRWTIDAK 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,635,420
Number of Sequences: 37544
Number of extensions: 352644
Number of successful extensions: 1022
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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