Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0726.Seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    29   2.8  
At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containi...    28   5.0  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   6.6  
At4g10890.1 68417.m01772 expressed protein                             27   8.7  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   8.7  

>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +2

Query: 101 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLLK 280
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +  +S  S      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 281 VKLSAHL 301
               AHL
Sbjct: 112 KAAEAHL 118


>At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 396 SITADACTDSAAHKCNYELFNRNNFSIR-YWSWNYRGCCTRLALQLFLVK-IFKVYSFRL 569
           +I + A T    ++ + +L   N+   + YW+     CCTRL    +  + IF   +F  
Sbjct: 11  AIASQALTFPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTFPN 70

Query: 570 RGLVRVPYRYFSSL 611
             +V   ++YFS +
Sbjct: 71  VFVVNSMFKYFSKM 84


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 514 DLPSNCSSLKYLKCTHSDYE 573
           DL +NCSSL+YL  +H+  E
Sbjct: 167 DLFNNCSSLRYLSLSHNHLE 186


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 1
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 65  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 199
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,362
Number of Sequences: 28952
Number of extensions: 255238
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)