Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0725.Seq
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.39 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   6.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.5  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 26  LPNSMPARRNAATTPPNCSASRVPTKKARNSSRLSAARTRTLPTKSRTSWTRSAKVAATS 205
           LP ++PA   AA  PP  +A       A  ++  +A ++  L   S + + R++     S
Sbjct: 125 LPPTLPAAAAAALLPPQTAAMAAYLNAAAVAA--AAQQSHRLMMTSPSGFNRASVSPLIS 182

Query: 206 TKSRKPG 226
           + S  PG
Sbjct: 183 SSSSPPG 189


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 615 SAPVTMPANSSASRSVAPMLFRTNWKSPAHSWSRPTAPVARPSRNSA 755
           SA   + ++   S + AP    T+  SPA   S  +AP+  P++ +A
Sbjct: 17  SAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAA 63


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 690  KSPAHSWSRPTAPVARP 740
            K    SW +PT P  RP
Sbjct: 1160 KPSTSSWQKPTKPSYRP 1176


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 350 RQTHPREGGRIRKHTQEPPA 409
           R THP E GR  K     PA
Sbjct: 351 RTTHPNEPGRFAKLLLRLPA 370


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 691 RVPHTLGAGRPRPSPGRA 744
           +VP   G GR  P P R+
Sbjct: 320 QVPQLAGGGRRGPGPARS 337


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.309    0.126    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,955
Number of Sequences: 336
Number of extensions: 2598
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)