Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0725.Seq
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   7.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   7.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 211 IEKARKRLEAEKDELRPPSKKPKRLSNKKRTRSSVLSSNCLRSDRRSTDASKRRRKNSKT 390
           I  A+KR++ E+  L PP+    RL+N    +    S N   S   +TD ++        
Sbjct: 197 ITPAKKRIKLEQSPLCPPA---PRLTNSNSIKHE--SDNSDYS--HTTDENRHSSTLDID 249

Query: 391 HARTTSVPSTP 423
           H   T + S P
Sbjct: 250 HKMLTPIKSEP 260


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +3

Query: 45  PEGMPQLLHRIVPPQGCLRRRPGTARGCPPREQEPCRRSQGP 170
           P   PQ   R  PP       PG   G PP  Q P +    P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP-SQNPSQMMISP 67


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 668 NALQNELEESRTLLEQADRARRQAEQELSDAQSNSTSSPH 787
           NA  N  + S +    +DR    A     +A+S  TS+P+
Sbjct: 254 NAAGNNEDSSDSGAAASDRPPASASSNEHEAESEHTSTPN 293


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 107 ARNSSRLSAARTRTLPTKSRTSWTRSAKVAATSTKSR 217
           +RN  RLS+AR    P ++R++      V AT TK R
Sbjct: 257 SRNGVRLSSARAFITPFENRSN--LHVIVNATVTKVR 291


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 695 SRTLLEQADRARRQAEQELSDAQSNSTSSPHR 790
           SR ++  +DR R      +S++ SNS    HR
Sbjct: 19  SRVMVSNSDRVRGNGNAIVSNSASNSVHG-HR 49


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 695 SRTLLEQADRARRQAEQELSDAQSNSTSSPHR 790
           SR ++  +DR R      +S++ SNS    HR
Sbjct: 20  SRVMVSNSDRVRGNGNAIVSNSASNSVHG-HR 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.126    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,858
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)