Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0722.Seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   7.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   7.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.5  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    21   9.5  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    21   9.5  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    21   9.5  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -1

Query: 615 APVSACPAHRSESVRAGWVPEMYPF 541
           +P  + P H S S        MYP+
Sbjct: 39  SPSGSSPQHSSSSASTSPAARMYPY 63


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -1

Query: 615 APVSACPAHRSESVRAGWVPEMYPF 541
           +P  + P H S S        MYP+
Sbjct: 39  SPSGSSPQHSSSSASTSPAARMYPY 63


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 369  GQAAETRPRHCRKQI*IPES 428
            G    T P HC+ +  +PE+
Sbjct: 1184 GDGVRTTPIHCQTEQDVPEA 1203


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 445 YYRQGIDSGIQICF 404
           +Y QG+++G + CF
Sbjct: 78  FYGQGMNAGFEDCF 91


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 445 YYRQGIDSGIQICF 404
           +Y QG+++G + CF
Sbjct: 311 FYGQGMNAGFEDCF 324


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 445 YYRQGIDSGIQICF 404
           +Y QG+++G + CF
Sbjct: 311 FYGQGMNAGFEDCF 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,389
Number of Sequences: 336
Number of extensions: 3533
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)