Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0722.Seq
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425... 38 0.007
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 33 0.21
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684... 33 0.28
05_07_0153 - 28051496-28051801,28051933-28052271 30 1.5
01_06_0154 - 27049218-27049517,27049679-27050107 30 1.5
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 29 3.5
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 4.6
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 28 6.0
02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496 28 6.0
>03_01_0575 +
4247431-4247489,4248475-4248547,4248792-4249229,
4252122-4253339
Length = 595
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -3
Query: 214 LRHTLNIVTQPVVPQHGT-MFTSHVRRLIPGFLQQVRMRYKRLSDGVHHFASNRVVLA 44
L +N +P P G+ F+ VRR +P FLQ V ++Y RL G H+ S+ V LA
Sbjct: 62 LTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSVNLKYVRL--GYHYLISHGVYLA 117
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 427 DSGIQICFRQCRGRVS-AAWPHSGLGGASLRTNCVRWS 317
D+G+Q+C R+C G S A+ ++ L R CV W+
Sbjct: 370 DAGLQLCRRRCLGNCSCTAYANANLSAPPGRRGCVMWT 407
>07_03_0276 +
16166528-16166796,16166824-16167291,16168048-16168414,
16168565-16168587,16170094-16170385
Length = 472
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 14 NETYACYVFKCENDSVAGEVVNAI-RQAFVAHADLLKKSRDKSPNMTCEHCPMLWYHRL 187
NETY+C K + D +A V A+ R++ V A KK D + + C+ P W HR+
Sbjct: 325 NETYSCACKKFQRDKIA--VRQAVKRKSQVIAASSKKKKLDDTSCLDCDD-PTRWGHRI 380
>05_07_0153 - 28051496-28051801,28051933-28052271
Length = 214
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WR+G R P S+C+ACG
Sbjct: 105 WRNGPRGPKSLCNACG 120
>01_06_0154 - 27049218-27049517,27049679-27050107
Length = 242
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WR+G R P S+C+ACG
Sbjct: 135 WRNGPRGPKSLCNACG 150
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WRSG P S+C+ACG
Sbjct: 681 WRSGPTGPRSLCNACG 696
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 248 LSYAI*RRGFFSPSYPQYRDTAGGTTAWDNVHKSCSATYPGIS 120
+ Y R +FSP R+ G AW ++SC T G+S
Sbjct: 403 MGYVAFGRSYFSPGLGS-RELDKGIFAWKGFYQSCRVTQQGLS 444
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WRSG P S+C+ACG
Sbjct: 199 WRSGPCGPKSLCNACG 214
>02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496
Length = 353
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WRSG P S+C+ACG
Sbjct: 189 WRSGPCGPKSLCNACG 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,656,583
Number of Sequences: 37544
Number of extensions: 440456
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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