Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0722.Seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_49673| Best HMM Match : PID (HMM E-Value=1.6e-05)                   30   2.0  
SB_50951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_45237| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)                   28   8.1  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 44  CENDSVAG-EVVNAIRQAFVAHADLLKKSRDKSPNMTCEHCPMLWYHRLC 190
           C++D V G EV      +   H+D  +  +D    + C+ CPM  YH  C
Sbjct: 427 CDDDEVMGVEVEMTSSSSEDIHSDYCRVCKDGGQLLCCDKCPMA-YHLKC 475


>SB_49673| Best HMM Match : PID (HMM E-Value=1.6e-05)
          Length = 193

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 29  CYVFKCENDSVAGEVVNAIRQAFV-AHADLLKKSRDKS 139
           C+VF C  ++ A  +  A+ +AF+ AHAD  +K R++S
Sbjct: 127 CHVFTCSKEAKAKAICVALSRAFLSAHADWTRK-RERS 163


>SB_50951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 430 IDSGIQICFRQCRGRVSAAWPHSGLGGASLRTNCVRWSHRSNWF 299
           + +  QI F     RV  A+P    G  S+ T  V WS + N F
Sbjct: 8   VSTAFQILFNGLFYRVPTAFPSVATGKKSVSTEKVTWSRKKNPF 51


>SB_45237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 249 SILRNIKAWVLFSVIPSIS*HSRWYHSMGQCSQVMFGDLSRDFFNRSACAT 97
           SIL N++A+V   +   I  H  W         V+F  +SR F N +  AT
Sbjct: 16  SILNNVRAYVRDHLAVWIRNHGGWLFDGAIIFAVLFAFVSRQFLNDTLKAT 66


>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
          Length = 998

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 152 CEHCPMLWYHRLCHDIEGMTEKRTHAFILRRI 247
           CE CP+   H+LC  +E +  ++ H  + + +
Sbjct: 238 CELCPLHHLHQLCTQLENLQVQQQHETLKKHL 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,144,767
Number of Sequences: 59808
Number of extensions: 495668
Number of successful extensions: 1379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)