Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0722.Seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    28   7.2  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    28   7.2  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 448 WYYRQGIDSGIQICFRQCRG 389
           WYY+ G+DS +++C RQ  G
Sbjct: 267 WYYKTGLDSQLEVCIRQPPG 286


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 14  NETYACYVFKCENDSVAGEVVNAIRQAF-VAH 106
           + T+ C VFKC   S A  VV  I QAF V H
Sbjct: 138 SNTFKCNVFKCSKKSQAMRVVRTIGQAFEVCH 169


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 14  NETYACYVFKCENDSVAGEVVNAIRQAF-VAH 106
           + T+ C VFKC   S A  VV  I QAF V H
Sbjct: 138 SNTFKCNVFKCSKKSQAMRVVRTIGQAFEVCH 169


>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 92  AFVAHAD-LLKKSRDKSPNMTCEHCPMLWYHRLCHDI----EGMTEKRTHAFILRR 244
           +FV H   LL   RD+ PN   E    LW     + I    EG +  RT+AF+LRR
Sbjct: 315 SFVLHQQALLAFERDRRPN---EEIDALWERARSNVINSAEEGRSLYRTYAFLLRR 367


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +2

Query: 80   AIRQAFVAHAD---LLKKSRDKSPNMTCEHCP 166
            A+  A VA AD   L+K+++ +  N+TCE CP
Sbjct: 1621 AVHIAHVATADEINLVKEAKQRGWNVTCEVCP 1652


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoformb protein.
          Length = 1420

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 47   ENDSVAGEVVNAIRQAFVAHADLLK----KSRDKSPNMTCEHCPMLWYHRLCHDIEGMTE 214
            EN       +N  RQ  + H +L+K    +  D    +  E+C      R+CH    +  
Sbjct: 1161 ENHKAIESEINIFRQ--LIHENLVKYYGVQVEDSDVIIFMEYCSQGTLERICHGKMDLKM 1218

Query: 215  KRTHAFILRRIEQYLKTNRI 274
             R +   L R  QYL +++I
Sbjct: 1219 VRQYTNSLLRAVQYLHSHKI 1238


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoforma protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 47   ENDSVAGEVVNAIRQAFVAHADLLK----KSRDKSPNMTCEHCPMLWYHRLCHDIEGMTE 214
            EN       +N  RQ  + H +L+K    +  D    +  E+C      R+CH    +  
Sbjct: 1161 ENHKAIESEINIFRQ--LIHENLVKYYGVQVEDSDVIIFMEYCSQGTLERICHGKMDLKM 1218

Query: 215  KRTHAFILRRIEQYLKTNRI 274
             R +   L R  QYL +++I
Sbjct: 1219 VRQYTNSLLRAVQYLHSHKI 1238


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 263 TNRISSSPSTRVEPI*SMRPANTIRS**CSSEPTVRPSSRDTSTTLPKTDLNS 421
           T   +++P+T   P  +   A T +S   +++ T   S+  T+TT PKT  ++
Sbjct: 273 TTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTTTTTTPKTPFDT 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,542
Number of Sequences: 27780
Number of extensions: 349209
Number of successful extensions: 1038
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)