Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0722.Seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 264 RTGSHHHQVPGWNQFDL 314
           ++ SHHH    W Q D+
Sbjct: 400 QSSSHHHGSKSWTQEDM 416


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = -1

Query: 186 SRWYHSMGQCSQVMFGDLSRDFFNRSACATNACRMAFTTSPA 61
           + W +     S+  +G+   + F R A   N C  A    P+
Sbjct: 136 ANWSYVSTVYSEGSYGEYGIEVFTREATERNVCIAAAVKVPS 177


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 149 SCSATYPGISSTGPHALQTLV 87
           +C+A Y  +  +GP  L TL+
Sbjct: 50  ACAALYERVEWSGPWILVTLI 70


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = -1

Query: 186 SRWYHSMGQCSQVMFGDLSRDFFNRSACATNACRMAFTTSPA 61
           + W +     S+  +G+   + F R A   N C  A    P+
Sbjct: 226 ANWSYVSTVYSEGSYGEYGIEVFTREATERNVCIAAAVKVPS 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,439
Number of Sequences: 438
Number of extensions: 4376
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)