Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0722.Seq
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26250.1 68415.m03151 beta-ketoacyl-CoA synthase family (FIDD... 35 0.058
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ... 31 0.54
At4g26150.1 68417.m03764 zinc finger (GATA type) family protein ... 31 0.54
At4g36620.1 68417.m05197 zinc finger (GATA type) family protein 30 1.3
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ... 30 1.3
At4g11510.1 68417.m01849 expressed protein ; expression support... 29 2.2
At2g18380.1 68415.m02141 zinc finger (GATA type) family protein 29 2.9
At4g16690.1 68417.m02520 esterase/lipase/thioesterase family pro... 29 3.8
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 29 3.8
At3g06740.1 68416.m00799 zinc finger (GATA type) family protein 28 5.0
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 28 6.7
At2g16280.1 68415.m01864 very-long-chain fatty acid condensing e... 28 6.7
At5g26930.1 68418.m03211 zinc finger (GATA type) family protein ... 27 8.8
At1g16510.1 68414.m01974 auxin-responsive family protein similar... 27 8.8
>At2g26250.1 68415.m03151 beta-ketoacyl-CoA synthase family
(FIDDLEHEAD) (FDH) identical to GB:AJ010713 (fiddlehead
protein)
Length = 550
Score = 34.7 bits (76), Expect = 0.058
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -3
Query: 187 QPVVPQHGT-MFTSHVRRLIPGFLQQVRMRYKRLSDGVHHFASNRVVLA 44
+P P G+ F+ VRR +P FLQ V ++Y +L G H+ ++ V LA
Sbjct: 20 EPSGPNAGSPTFSVRVRRRLPDFLQSVNLKYVKL--GYHYLINHAVYLA 66
>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
similar to unknown protein (pir |T04270)
Length = 398
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WRSG R P S+C+ACG
Sbjct: 243 WRSGPRGPKSLCNACG 258
>At4g26150.1 68417.m03764 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 352
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WRSG R P S+C+ACG
Sbjct: 212 WRSGPRGPKSLCNACG 227
>At4g36620.1 68417.m05197 zinc finger (GATA type) family protein
Length = 211
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WR+G R P S+C+ACG
Sbjct: 88 WRNGPRGPKSLCNACG 103
>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 295
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WR+G R P S+C+ACG
Sbjct: 165 WRNGPRGPKSLCNACG 180
>At4g11510.1 68417.m01849 expressed protein ; expression supported
by MPSS
Length = 85
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 666 GRGSRHPGSWCERATCPAPVSACPAHR 586
GRG R PG C+ CP A P HR
Sbjct: 40 GRGDRQPG--CDHGNCPPDQPANPYHR 64
>At2g18380.1 68415.m02141 zinc finger (GATA type) family protein
Length = 207
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WR+G + P S+C+ACG
Sbjct: 104 WRNGPKGPKSLCNACG 119
>At4g16690.1 68417.m02520 esterase/lipase/thioesterase family
protein similar to ethylene-induced esterase [Citrus
sinensis] GI:14279437, polyneuridine aldehyde esterase
[Rauvolfia serpentina] GI:6651393, SP|Q40708 PIR7A
protein {Oryza sativa}; contains Interpro entry
IPR000379
Length = 262
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 208 DGEKNPRLYI--A*DRTVPEDEQDLIITKYQGGTNLIYETSEHNSF 339
+ EK PR+YI A D QDL++ + + E S+H++F
Sbjct: 197 EAEKVPRVYIKTAKDNLFDSVRQDLLVENWPPSQLYVLEDSDHSAF 242
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3
Query: 157 FTSHVRRLIPGFLQQVRMRYKRLSDGVHHFASNRVVLAFEDIAGVRF 17
F +++L+ +Q++ + +KRLSD + F S + F +I G R+
Sbjct: 27 FPRQIQQLLFNAIQRIPI-FKRLSDKILEFFSPYAYIRFREIEGYRY 72
>At3g06740.1 68416.m00799 zinc finger (GATA type) family protein
Length = 149
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 10 NERNVRLLCLQMRERLGCWRSGERHPTSVCSACG 111
NE+ +C + L WR G P S+C+ACG
Sbjct: 38 NEKKSCAICGTSKTPL--WRGGPAGPKSLCNACG 69
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 52 RLGCWRSGERHPTSVCSACG 111
R WR G P S+C+ACG
Sbjct: 51 RTPLWRGGPAGPKSLCNACG 70
>At2g16280.1 68415.m01864 very-long-chain fatty acid condensing
enzyme, putative similar to fatty acid condensing enzyme
CUT1 GI:5001734 from [Arabidopsis thaliana]
Length = 512
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 142 RRLIPGFLQQVRMRYKRLSDGVHHFASNRVVLAFEDIAGVRFVRFS 5
RR +P FLQ V M+Y +L G H+ ++ L + V S
Sbjct: 22 RRKLPNFLQSVNMKYVKL--GYHYLITHLFKLCLVPLMAVLVTEIS 65
>At5g26930.1 68418.m03211 zinc finger (GATA type) family protein
various predicted proteins, Arabidopsis thaliana
Length = 120
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 64 WRSGERHPTSVCSACG 111
WR G P S+C+ACG
Sbjct: 39 WRGGPTGPKSLCNACG 54
>At1g16510.1 68414.m01974 auxin-responsive family protein similar to
indole-3-acetic acid induced protein (SP:D14414) [Vigna
radiata.]; ESTs gb|AA712892 and gb|Z17613 come from this
gene
Length = 147
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 618 PAPVSACPAHRSESVRAGWVP 556
P P S CPA R +V AG VP
Sbjct: 40 PPPWSICPARRVNTVPAGHVP 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,075
Number of Sequences: 28952
Number of extensions: 328179
Number of successful extensions: 923
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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