Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0721.Seq
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 44 2e-05
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 29 0.57
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 29 0.75
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 29 0.75
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 29 0.75
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 29 0.99
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 28 1.3
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 1.7
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p... 27 3.0
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 26 5.3
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po... 26 5.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 7.0
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 7.0
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 9.3
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Frame = +2
Query: 269 IMAIVHQLDNQYREEVDIDPRVHRRLIGLRGKNIRRIMDEYKVDIRFPKHGD---DSIVV 439
++A+V+Q +V IDP + R +IG +GKN++++ +E++V++ ++G+ D IV
Sbjct: 553 LLALVNQFPESKFYKVTIDPLLQRYVIGSKGKNLQKLRNEHQVELLVGEYGEEDPDVIVC 612
Query: 440 ITGDEDNVL--NAKEHLLNLAE 499
G +D ++ L +LAE
Sbjct: 613 YIGADDGKSPDQIQKELADLAE 634
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/78 (30%), Positives = 44/78 (56%)
Frame = +3
Query: 3 SVENAKQALTEKIAEMEKEKEDRLLRSFELKFKVDPEYHPLVIGKGGSVITKIRTDFGVQ 182
+V K+ + + IA +EK + +++ + + H +IG GGS+I KIR V+
Sbjct: 1182 AVRGHKENVEKAIASLEKSIK-QVMENCIAYLGIPTNLHRRIIGSGGSIINKIRKIAQVK 1240
Query: 183 INLPKRGEPDDDIITIQG 236
I++P+ P D+I+ +QG
Sbjct: 1241 IDVPR--TPGDEIVVVQG 1256
Score = 42.3 bits (95), Expect = 8e-05
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Frame = +2
Query: 314 VDIDPRVHRRLIGLRGKNIRRIMDEYKVDIRFPKHGDDS--------------IVVITGD 451
V+I HR+LIG GK +RR+ +++ V +RFP+ D S VVI G
Sbjct: 801 VNIPNDFHRQLIGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEVVIRGG 860
Query: 452 EDNVLNAKEHLLNLAE 499
+ +V AK+ LL L E
Sbjct: 861 KKSVAAAKQELLELYE 876
Score = 39.1 bits (87), Expect = 7e-04
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 320 IDPRVHRRLIGLRGKNIRRIMDEYKVDIRFPKHGDDSIVVITGDEDNVLNAKEHLLNLAE 499
I +HRR+IG G I +I +V I P+ D IVV+ G V+ AK+ + +
Sbjct: 1214 IPTNLHRRIIGSGGSIINKIRKIAQVKIDVPRTPGDEIVVVQGSRAGVVKAKDLIFERLQ 1273
Query: 500 E 502
E
Sbjct: 1274 E 1274
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 9 ENAKQALTEKIAEMEKEKEDRLLRSFELKFKVDPEYHPLVIGKGGSVITKIRTDFGVQIN 188
++ ++ ++E + K +L S +F +Y VIGK GS ++ +R D GVQIN
Sbjct: 705 KDVERVVSEIKQVVRDAKNHEILHSHVEEFDFPAQYSKNVIGKNGSNVSSLREDLGVQIN 764
Query: 189 L 191
+
Sbjct: 765 V 765
Score = 33.5 bits (73), Expect = 0.035
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 302 YREEVDIDPRVHRRLIGLRGKNIRRIMDEY--KVDIRFPKHGDDSIVVITGDEDNVLNAK 475
Y +DI + R++G G + I ++ K+DI + + V + G + +V NA
Sbjct: 883 YTSTIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGDVSTEETTPVSVRGAKADVENAI 942
Query: 476 EHLLNLAEEYLKMSQTVI 529
+ + +AEE + + VI
Sbjct: 943 KEISAIAEEVKNLVEKVI 960
Score = 32.3 bits (70), Expect = 0.081
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 93 KFKVDPEYHPLVIGKGGSVITKIRTDFGVQINLPKRGEPDDDII 224
K +DP VIG G + K+R + V++ + + GE D D+I
Sbjct: 567 KVTIDPLLQRYVIGSKGKNLQKLRNEHQVELLVGEYGEEDPDVI 610
Score = 28.7 bits (61), Expect = 0.99
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 126 VIGKGGSVITKIRTDFGVQINLPKRGEPDDDIITIQG 236
V+G+ GS + IRT F V+I++ + ++++G
Sbjct: 897 VVGRNGSTVENIRTQFDVKIDIGDVSTEETTPVSVRG 933
Score = 28.7 bits (61), Expect = 0.99
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 21 QALTEKIAEMEKEKEDRLLRSFELKFKVDPEYHPLVIGKGGSVITKIRTDFGVQINLPKR 200
+AL ++ E+ +E ++++ E K +V +IG+ GS I +N+P
Sbjct: 1022 EALETRLLEIVEELKNQV----EEKIEVPQRCISSIIGRMGSTRRDIERKTSTMLNIPNV 1077
Query: 201 GEPDDDI-ITIQGYEDKAHRLK 263
+P++ + ITI G + + K
Sbjct: 1078 LDPEETVTITIVGSPENCEKAK 1099
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 3 SVENAKQALTEKIAEMEKEKEDRLLRSFELKFKVDPEYHPLVIGKGGS 146
SV AK + I E+ E+ + E K+D EYH +IG GS
Sbjct: 930 SVRGAKADVENAIKEISAIAEE-VKNLVEKVIKIDREYHRYLIGPNGS 976
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 269 IMAIVHQLDNQYREEVDIDPRVHRRLIGLRGKNIRRIMDE 388
I AI ++ N + + ID HR LIG G ++ + E
Sbjct: 945 ISAIAEEVKNLVEKVIKIDREYHRYLIGPNGSKLQNTIKE 984
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 344 LIGLRGKNIRRIMDEYKVDIRFPKHGD 424
+IG G+N++ IMD I+ PK +
Sbjct: 239 IIGTNGQNLKSIMDRTSTRIQIPKRNN 265
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 284 HQLDNQYREEVDIDPRVHRRLIGLRGKNIRRIMDEYKVDI 403
H++ + + EE D + + +IG G N+ + ++ V I
Sbjct: 724 HEILHSHVEEFDFPAQYSKNVIGKNGSNVSSLREDLGVQI 763
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 624 WTVGTTRP*HRLHSRVPDHARCSAAATLASRL 719
+T T RP RLH+ + +A SA+ LASRL
Sbjct: 190 YTTETIRPHVRLHNSLSTNAALSASVVLASRL 221
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 29.1 bits (62), Expect = 0.75
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 320 IDPRVHRRLIGLRGKNIRRIMDEYKVDIRF 409
+ +H++LIG RG+ I+R+ Y I F
Sbjct: 585 VPEEIHKKLIGFRGEQIQRVTKLYNSYIEF 614
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.75
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 126 VIGKGGSVITKIRTDFGVQINLPKRGEPDDD 218
+IG+GGS I++IR G +I++ K EP D+
Sbjct: 335 IIGRGGSKISEIRRTSGSKISIAK--EPHDE 363
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.75
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +3
Query: 18 KQALTEKIAEMEKEKEDRLLRSFELKFKVDPEYHPLV 128
KQA++E ++ ++ K+D L+ + ++ + +PEY P V
Sbjct: 529 KQAVSEGMSTVDLPKDDAKLKEWIIEREWNPEYKPFV 565
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 28.7 bits (61), Expect = 0.99
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 227 SNDIIIWLSTLG*VDLDTKVCSDFCNDRTTFSYHQRMIFWI 105
SND+I+ LS+ + D ++ SD + T Y ++ WI
Sbjct: 145 SNDVILSLSSFYLIQKDQRIFSDLQFSQKTVDYRLSLLRWI 185
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 774 KNRKIELSAVDEM--LATRSPSGWR-GLRLLSTGHGRELVSGGG 652
+NRK+ S V + + T S WR GLR ++ GH LV GG
Sbjct: 63 ENRKLSPSEVGPLSIVDTSDSSWWRTGLREIARGHVAALVLAGG 106
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 323 DPRVHRRLIGLRGKNIRRIM-DEYKVDIRF 409
DP V R +I LRG NI +M ++ +DI F
Sbjct: 410 DPSVCRSIIALRGYNIFGLMLKKFSIDIEF 439
>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 226 VMISSSGSPRLGKLIWTPKSVRIFVMTEPPFPITKG 119
+++S+ G GK IWTP+ FV+T FP+ G
Sbjct: 33 LILSAVGYLGKGKWIWTPERKAHFVLTH--FPLIDG 66
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 739 DVSDAVPKRLARVAAAEHRAWSGTRE 662
+V PK+LAR A ++ AWS +E
Sbjct: 499 EVEKTEPKKLARPAKIKNEAWSKQKE 524
>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 228
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 18 KQALTEKIAEMEKEKEDRLLRSFELKFKVDPEYHPLV 128
KQA++E ++ ++ K+D L+ + ++ + +PEY V
Sbjct: 192 KQAISEGMSTVDLPKDDAKLKEWIIEREWNPEYRNFV 228
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -3
Query: 451 ITRYHHNTVISMFRESNVNFVFVHNSPYIFTSQTNQSSVDTWVDVHFLSVLIIQLMHYCH 272
+ YH+ + +E N + + SP+ F N+S+ D +LI Q CH
Sbjct: 148 LRNYHYLNLDQDIQEENDSLI----SPFFFRISPNESAYDYLPPKKVSDILIEQFFFRCH 203
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 465 LMPRNIFLIWLKNI*RCRRPLSTAGSTFFG*FRRCTGSG 581
L+P + +I ++ R L+ T FG F CTG+G
Sbjct: 15 LIPTALLIIGSVSVPSTRMTLAKVEGTEFGIFGTCTGNG 53
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 VENAKQALTEKIAEMEK--EKEDRLLRSFELKFKVDPEYHPLVIGKG 140
+E+ + + K +E+ +++DR L+ E K+ P Y L + KG
Sbjct: 640 IESGTERIWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMMKG 686
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,545
Number of Sequences: 5004
Number of extensions: 72944
Number of successful extensions: 245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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