Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0721.Seq
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0131 - 14706123-14706171,14706364-14706422,14706504-147067... 37 0.021
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 33 0.34
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 32 0.45
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 32 0.59
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 31 0.78
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 31 1.0
08_02_0222 + 14446967-14448310 30 1.8
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 29 3.2
12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368 29 4.2
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 29 4.2
05_06_0177 + 26164873-26165113,26165416-26165762 29 4.2
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 29 4.2
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 28 7.3
05_06_0267 - 26784861-26784896,26785324-26785404,26785530-267857... 28 7.3
03_02_0751 + 10919768-10920282,10920518-10920710,10920796-109209... 28 7.3
12_02_0365 + 18045340-18045783 28 9.6
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 28 9.6
05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312... 28 9.6
03_05_0138 + 21172149-21172232,21172662-21172799,21172920-21173084 28 9.6
>03_03_0131 -
14706123-14706171,14706364-14706422,14706504-14706770,
14706857-14707114,14707207-14707629,14707942-14708514
Length = 542
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 51 EKEKEDRLLRSFELKFKVDPEYHPLVIGKGGSVITKIRTDFGVQINLPKRGEPDDDIITI 230
+ +E+ + F L+ VIGKGG +I +IR + G I + DD IIT+
Sbjct: 269 QPRREESSAKEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKVDSSNTEDDCIITV 328
Query: 231 QGYE 242
E
Sbjct: 329 SAKE 332
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +3
Query: 51 EKEKEDRLLRSFELKFKVDPEYHPLVIGKGGSVITKIRTDFGVQI------NLPKRGEPD 212
EK + + S+ + V +IGKGGS+IT+IR I N+PK D
Sbjct: 354 EKTDPESAIPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAAED 413
Query: 213 DDIITIQG 236
++++ I G
Sbjct: 414 EEMVQISG 421
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +3
Query: 45 EMEKEKEDRLLRSFELKFKVDPEYHPLVIGKGGSVITKIRTDFGVQI------NLPKRGE 206
++ E+ D L ++ V + +IGKGG +I IR+D G I NLP
Sbjct: 125 DIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPACAI 184
Query: 207 PDDDIITIQG 236
D+++ I G
Sbjct: 185 SGDELLQISG 194
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 32.7 bits (71), Expect = 0.34
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 36 KIAEMEKEKEDRLLRSFELKFKVDPEYHPLVIGKGGSVITKIRTDFGVQINLPKRGE--- 206
K+ + E +D + L+F V +IGKGGS I + ++ G +I L + E
Sbjct: 43 KVLLIHLEWKDDKEKPTHLRFLVSNTAAGCIIGKGGSTINEFQSQSGARIQLSRSHEFFP 102
Query: 207 -PDDDIITIQGYEDK 248
+D II + G D+
Sbjct: 103 GTNDRIIMVSGLFDE 117
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 123 LVIGKGGSVITKIRTDFGVQINL-PKRGEPDDDIITIQGYE 242
LVIGKGG I IR + G +I++ + + ++ IITI E
Sbjct: 328 LVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNE 368
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 31.9 bits (69), Expect = 0.59
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = -1
Query: 741 EMLATRSPSGWRGLRLLSTGHGRELVSGGGVRGALFPRSTLHYKPGTG 598
EMLA PSG LL+ GR GGG RG L + T + +P +G
Sbjct: 160 EMLAMLGPSGSGKTTLLTALGGRHGGGGGGGRGMLSGKITYNGQPFSG 207
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +3
Query: 126 VIGKGGSVITKIRTDFGVQI------NLPKRGEPDDDIITIQG 236
++GKGGS+I ++R D G I NLP+ D+++ I G
Sbjct: 176 LLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISG 218
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 126 VIGKGGSVITKIRTDFGVQINL 191
VIGKGG +I KIR + GV+I +
Sbjct: 102 VIGKGGGIIAKIRQETGVKIRV 123
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 102 VDPEYHPLVIGKGGSVITKIRTDFGVQI------NLPKRGEPDDDIITIQG 236
V P ++GKGGS+I ++R G I +PK +D+++ I G
Sbjct: 504 VSPNQVGCLLGKGGSIIAEMRKLSGAHIIVLSKDKIPKGVPENDEVVQISG 554
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 126 VIGKGGSVITKIRTDFGVQIN-LPKRGEPDDDIITIQGYEDKAHRLKTP*WQ*CINWIIN 302
+IGKGG+ I I+ D G +I L + +D I+ I G + N I++
Sbjct: 428 IIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGDGISP-----AQNAILH 482
Query: 303 TERKWTSTHVSTED*LVCEV 362
+RK T + E +C +
Sbjct: 483 VQRKIVPTSNTKEGPAICRL 502
>08_02_0222 + 14446967-14448310
Length = 447
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 711 WRGLRLLSTGHGRELVSGGGVRGALFPRSTLHYKPGTGRC 592
W RL TG+ R GG +F + L+Y G GRC
Sbjct: 90 WITQRLERTGNLRLAGGGGSGEAVVFEKHRLNYHAGEGRC 129
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 27 LTEKIAEMEKEKEDRLLRSFELKFKVDPEYHPL 125
L E + + KE+E L LK K+D EYH L
Sbjct: 539 LEESLGPLSKERESLLQEHEALKEKLDQEYHQL 571
>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
Length = 487
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -1
Query: 759 ELSAVDEMLATRSPSGWRGLRLLST----GHGRELVSGGGVRGALFPRSTLHYKPGT 601
EL+A++++LA R + R L+ S+ G GR + G G FP S+ H+ P T
Sbjct: 132 ELAALEDLLAKRD-AALRALQSSSSSRGGGGGRGVGGGSGRATPSFPGSSPHHYPST 187
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = +3
Query: 126 VIGKGGSVITKIRTDFGVQI-------NLPKRGEPDDDIITIQG 236
V+GKGG + ++R + G QI LP P D++I I G
Sbjct: 123 VLGKGGKTVERMRQESGAQIRVFRNRDQLPPWAAPVDELIHISG 166
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 126 VIGKGGSVITKIRTDFGVQIN-LPKRGEPDDDIITIQGYED 245
+IGKGGS I ++++ G I + + ++ +I I +E+
Sbjct: 258 IIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHEN 298
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 6/43 (13%)
Frame = +3
Query: 126 VIGKGGSVITKIR--TDFGVQI----NLPKRGEPDDDIITIQG 236
++GKGGS+I ++R T G++I +P+ + +D+++ + G
Sbjct: 342 LLGKGGSIIAEMRKITGAGIRIFGNEQIPRCAQRNDELVQVTG 384
>05_06_0177 + 26164873-26165113,26165416-26165762
Length = 195
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 654 GVRGALFPRSTLHYKPGTG 598
GVRG P+STL + PGTG
Sbjct: 160 GVRGVYRPKSTLMFGPGTG 178
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -1
Query: 558 ITQRRCCRRLITVCDIFKYSSAKLRRCSLALSTLSSSPVITTILS 424
+ ++RC I + DI+ S KL RC+L S S VITT +S
Sbjct: 457 VKEKRC---FIVIDDIWDKESWKLIRCALQESDCGSRLVITTRIS 498
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 123 LVIGKGGSVITKIRTDFGVQINLPKRGEPDDDIIT 227
L+IGKGG I ++T G +I L + P+ +T
Sbjct: 259 LIIGKGGETIKTLQTRSGARIQLIPQHPPEGVTLT 293
>05_06_0267 -
26784861-26784896,26785324-26785404,26785530-26785702,
26785780-26785938,26786199-26786328,26786447-26786609,
26787027-26787109,26787605-26787664,26787819-26787940,
26789126-26789275,26789354-26789546,26790156-26790393,
26791240-26791320,26791403-26791647
Length = 637
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +3
Query: 9 ENAKQALTEKIAEMEKEKEDRLLRSFELKFKVDP 110
+ A+ + EKI E++KE+E +L++S LK ++ P
Sbjct: 434 QEARGKVQEKIKELQKEREQKLIQS--LKDRLQP 465
>03_02_0751 +
10919768-10920282,10920518-10920710,10920796-10920986,
10921148-10921306,10921390-10921720
Length = 462
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 508 KDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPWEQRAPDTA 657
K+ A + AP+ GD G+ +GAE A G G +G + D+A
Sbjct: 4 KEAALGSENGGAPANGDSGSAMGAEGAPAGGGDGNSAEGENTTKEVADSA 53
>12_02_0365 + 18045340-18045783
Length = 147
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 3 SVENAKQALTEKIAEMEK--EKEDRLLRSFELKFKV 104
+V+ K+ L E +A M + EK+ + + FELK+K+
Sbjct: 81 AVQRNKEGLEEVVARMNEALEKKKKEITEFELKYKI 116
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 730 DAVPKRLARVAAAEHRAW-SGTREWRR--CQGRVVPTVHP 620
DA +RLA A EH W S EW+R Q + +P +P
Sbjct: 333 DAAAERLAHDALLEHMKWESQIEEWQRPILQDKSLPEWYP 372
>05_01_0395 +
3118480-3119097,3119699-3119989,3120063-3120114,
3120395-3120546
Length = 370
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = -1
Query: 525 TVCDIFKYSSAKLRRCSLALSTLSSSPVITTILSSP 418
++ +F Y++ KL +L LS+L+S P++TT +SSP
Sbjct: 241 SLSSLFTYNTTKLT--ALPLSSLTS-PILTTPMSSP 273
>03_05_0138 + 21172149-21172232,21172662-21172799,21172920-21173084
Length = 128
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 461 VLNAKEHLLNLAEEYLKMSQTVINRRQHLL 550
VLN HLL++ +LK +++N+R+ LL
Sbjct: 63 VLNKLRHLLSIKLVHLKRQFSILNKRKELL 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,015,822
Number of Sequences: 37544
Number of extensions: 519423
Number of successful extensions: 1817
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -