Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0720.Seq
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 30 0.40
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 29 0.70
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 27 2.1
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 27 2.1
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 26 5.0
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 8.7
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 25 8.7
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 8.7
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 8.7
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 25 8.7
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 8.7
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 690 CSLYYKKKSPLPVLLSYVLNPQRVSSCALPVSRSHPSNVSIVELT 556
CS YY K L +LS+ N S L S +N S+VEL+
Sbjct: 188 CSAYYLKTRLLLAVLSFAQNDSTFSLLKLVPSLQDNTNASLVELS 232
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 29.1 bits (62), Expect = 0.70
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 13 SFYPTLLLSGVIWPIEGMPWILRYVSLCLPLTLATNSLRSILTRGWPFTDSDVYMGFVST 192
+F+ L L IW I G+ I+R+ L L L L S+ T + D D + +
Sbjct: 136 TFWYALYLYPFIWIILGIVAIIRFEFLWLALVAVAIGLTSVNTAAYSRCDKDAKRRWATE 195
Query: 193 LA 198
LA
Sbjct: 196 LA 197
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 391 SAWRLAGEAAVCLLNDFSRN 450
S+W + G++A CLL+ SRN
Sbjct: 204 SSWNVVGDSATCLLSCSSRN 223
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 21 PHAAAERGDLAHRRDALDPALR-VPLPAPHPG-HELAAVHPDAGLALHG 161
P + D+ D ++ L V +P HP ++ +HP G+ LHG
Sbjct: 167 PPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHG 215
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 129 VHPDAGLALHGLGRVHGLRVDVGLDRALPHRNPH 230
VH +G+A V G R D G + PH PH
Sbjct: 193 VHISSGMAALAYSIVIGKRCDHGTTKYRPHNVPH 226
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 324 RMITVETFPRECFDWIILIVIRECMAAGG 410
R + V+ F REC ++ L+ IR C A GG
Sbjct: 501 RELAVQIF-RECKPFLKLLNIRACCAYGG 528
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -1
Query: 312 NTSPRHTTESVA--RSVQDFALIPFEFQDREGYDEEERDP 199
NT+ RHTT SV+ R++++ ++IP D E ++ R P
Sbjct: 80 NTNVRHTTASVSTRRALEEKSIIP--ATDDEPASKKRRQP 117
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 424 KQRPRPPAAMHSRITINIIQSKHSRGNVS 338
K P+PP+ S+ ++ ++ H+ GNV+
Sbjct: 308 KLEPQPPSGSPSKKPVSELEELHTAGNVN 336
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 87 VPLPAPHPGHELAAVHPD 140
VP+P P PGH+ A V D
Sbjct: 369 VPVPEPLPGHQWAEVKHD 386
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 691 MFLILQKKKSFTSIIIVCIKSTTCFVVRPTCQPF 590
+FL++ +K+ SII +C +RP +PF
Sbjct: 63 LFLLVWQKEICLSIIAICFACLLSPSLRPYAEPF 96
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 165 GRVHGLRVDVGLDRALPHRNPHDPEIQTELMRNP 266
GR G++ + L RA HR+ + E +E+ NP
Sbjct: 12 GRQSGIQKMLNLKRARLHRSVREQESSSEVHANP 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,690
Number of Sequences: 5004
Number of extensions: 61749
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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