Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0720.Seq
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022 30 1.7
03_06_0651 + 35297560-35297895,35298881-35298991,35299670-352997... 30 2.2
02_02_0343 + 9163976-9165220 29 3.0
07_03_1787 - 29515140-29515488,29517302-29517918 29 3.9
06_03_0767 - 24436161-24436460 29 3.9
06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272... 29 3.9
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 29 5.2
03_01_0321 + 2512830-2513114,2513390-2513428,2513647-2513674,251... 28 6.9
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 28 6.9
03_05_0904 + 28658251-28659288 28 9.1
02_05_0409 - 28723534-28724646 28 9.1
>02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022
Length = 458
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 63 DALDPALRVPLPAPHPGHELAAVHPDAGLALHGLGRVHGLRVDVGLD 203
D +D P+P P+ G + A + + L HG G HGL D GLD
Sbjct: 11 DVVDFGYAAPMPPPYVGFDPAGMGGERQLFQHG-GACHGL-YDGGLD 55
>03_06_0651 +
35297560-35297895,35298881-35298991,35299670-35299744,
35300165-35300225,35300406-35300479,35300564-35300668,
35301099-35301206,35301604-35301707,35302005-35302223,
35302505-35302646,35302694-35302825,35302962-35303066
Length = 523
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 58 EGMPWILRYVSLCLPLTLATNSLRSILTRGWPFTDSDVYMGFVSTLAWIALFLIVTLT 231
EG WI SL P T+A ++ +PFTD +G+ TLA++ L +++ ++
Sbjct: 224 EGFFWI---PSLAGPTTIAARQSGQGISWLFPFTDGHPPLGWSDTLAYLVLPVLLVIS 278
>02_02_0343 + 9163976-9165220
Length = 414
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 117 ELAAVHPDAGLALHGLGRVHGLRV 188
EL A H D LALH LG+V + +
Sbjct: 26 ELTAYHYDGALALHNLGKVKAMEI 49
>07_03_1787 - 29515140-29515488,29517302-29517918
Length = 321
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 49 WPIEGMPWILRYVSLCLPLTLATNSLRSILTRGWPFTDSDVYMG 180
WP+ + R V + PL + T+S S++TRGW D D+ G
Sbjct: 211 WPVATVSAYERKVMVQGPLCINTSS-SSVITRGWFDMDMDMAAG 253
>06_03_0767 - 24436161-24436460
Length = 99
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 1 LALGSFYPTLLLSGVIWPIEGMPWILR 81
+A+ S LLLS ++W ++G WILR
Sbjct: 62 VAVASSLRRLLLSRLVWKLQGGDWILR 88
>06_01_0379 -
2723365-2723490,2724558-2724647,2724813-2725046,
2725174-2725470
Length = 248
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +3
Query: 30 AAERGDLAHRRDALDPALRVPLPAPHPGHELAAVHPDAGLALHGLGRVHG-----LRVDV 194
AA DLA R A +PLP P +L+ V A LGR G LR+D
Sbjct: 2 AAAADDLARRLAAF-----IPLPQPPQKEQLSGVAAAVLDAGGRLGRAVGDVFRRLRIDE 56
Query: 195 GLDRALPHRN 224
GLD AL R+
Sbjct: 57 GLDVALAQRH 66
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +2
Query: 365 LDYINSNSGVHGGWR 409
L ++++NSGV+GGWR
Sbjct: 830 LGFVDNNSGVYGGWR 844
>03_01_0321 +
2512830-2513114,2513390-2513428,2513647-2513674,
2513893-2513975,2514104-2514144,2514539-2514624,
2514941-2514963
Length = 194
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 31 LLSGVIWPIEGMPWILRYVSLCLPLTLATNSLRSILTRGW 150
++S +W P LR S CLPL LA ++ ++ W
Sbjct: 1 MVSWSLWSAAAFPSSLRSRSRCLPLKLAEPAVADVVWSQW 40
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 446 RLKSFKRQTAASPASRHALPNYY*YNPVETLTRECFDCNHTVHK 315
RL SFK Q ++RH YY +P +LT E HT K
Sbjct: 496 RLTSFKNQFQDQGSARHFSDPYYYVSPQPSLTVESSTQMHTDSK 539
>03_05_0904 + 28658251-28659288
Length = 345
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 15 VLPHAAAERGDLAHRRDALDPALRVPLPAPHPGHELAAVHPDAGLALHGLGRVHGLRV 188
VLP +A+ GD+A + +D + A AAV A AL GL +H RV
Sbjct: 121 VLPASASASGDVALLLELVDGGSLASVAARAGAFPEAAVAEVAAQALSGLACLHARRV 178
>02_05_0409 - 28723534-28724646
Length = 370
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 54 HRRDALDPALR--VPLPAPHPGHELAAVHPDAGLAL 155
H DAL A R +PLP+PH + AA+ P L L
Sbjct: 114 HLVDALTGATRHALPLPSPHFAYHYAALAPSRRLLL 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,306,962
Number of Sequences: 37544
Number of extensions: 447105
Number of successful extensions: 1248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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