Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0720.Seq
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   29   4.0  
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  

>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 88   SLCLPLTLATNSLRSILTRGWPFTDSD-VYMGFVSTLAWIALFLIVTLTILKFKRN 252
            ++CLPL L+ + L      GW ++ +  V + FVS +  +  ++I+ LT+ K  R+
Sbjct: 1166 AICLPLQLSKDKLA-----GWEYSVAIFVVLNFVSFVFILVAYIIMFLTVRKMSRS 1216


>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1364

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 263 ISH*FRLNFRIVRVTMRKSAIQANVDTKPMYTSESVKGQPRVRMDRSEF 117
           IS  F   +RIV+  + +  I +N    P YT ES + Q   R  +  F
Sbjct: 507 ISQFFIATYRIVKPIIPEIKISSNTPASPSYTQESQEPQEETRHCKRPF 555


>SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 332 NHTVHKLTPHRVTQPSP*RDPSRISH*FRLNFRIVRVTMRKSAIQANVDTKPMYTSESV 156
           N T+HK+  +    PSP          F L   + R   R S I A ++  P+Y +E +
Sbjct: 250 NKTLHKVAAYLKLLPSPDESAQEEDREFLLEMLVSRHEKRLSQIDA-INDMPLYPTEQI 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,318,234
Number of Sequences: 59808
Number of extensions: 497326
Number of successful extensions: 1445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)