Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0720.Seq
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   1.00 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.3  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 151 PFTDSDVYMGFVSTLAWIA-LFLIVT 225
           P T+SD Y+GF+  L  I  +F IV+
Sbjct: 58  PVTNSDTYIGFLFVLGLIVPVFTIVS 83


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 3   GPGFVLPHAAAERGDLAHRRDALDPALRVPLP 98
           GP   L  AAA +  LA  R+    +  +PLP
Sbjct: 197 GPSKKLAKAAASKAALAKLRNVHSSSFCIPLP 228


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 719 IISNISCRYNVPYITKKKVLYQYYYRMY*IHNVFRRAPYLSAVHIPV 579
           IIS++S  YN      KK+    Y ++Y  +N+     Y+  + IPV
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYKKLY--YNI----NYIEQIPIPV 121


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 719 IISNISCRYNVPYITKKKVLYQYYYRMY*IHNVFRRAPYLSAVHIPV 579
           IIS++S  YN      KK+    Y ++Y  +N+     Y+  + IPV
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYKKLY--YNI----NYIEQIPIPV 121


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 719 IISNISCRYNVPYITKKKVLYQYYYRMY*IHNVFRRAPYLSAVHIPV 579
           IIS++S  YN      KK+    Y ++Y  +N+     Y+  + IPV
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYRKLY--YNI----NYIEQIPIPV 121


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 512 RDPPSTCVLYSSFINTV 462
           R PP+    YSS++N++
Sbjct: 367 RQPPTLSESYSSYVNSM 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,444
Number of Sequences: 438
Number of extensions: 4865
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)