Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0720.Seq
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60930.1 68416.m06816 expressed protein                             32   0.46 
At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64...    28   5.7  
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (...    28   7.6  
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    28   7.6  
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote...    27   10.0 
At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    27   10.0 

>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 9   GFVLPHAAAERGDLAHRRDALDPALRVPL---PAPHPGHELAAVHPDAGLALHGLGRVHG 179
           G V+P A A +      RD ++P    P+   PA   G E +A  P+A LAL  + +  G
Sbjct: 432 GNVIPDATAPQTAPEASRDGVNPYTAGPVDAAPAEAQGAEPSAAAPEAVLALPAIDKAAG 491

Query: 180 LRVDV 194
            R+ V
Sbjct: 492 KRIRV 496


>At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64194
           Lysosomal acid lipase/cholesteryl ester hydrolase
           precursor (EC 3.1.1.13) {Rattus norvegicus}; contains
           Pfam profile PF04083: ab-hydrolase associated lipase
           region
          Length = 418

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 10  GSFYPTLLLSGVIWPIEGMPWILRYVSLCLPLTLATNSLRSIL--TRGWPFTDSDVYMGF 183
           G   P L+  G++  ++GM W+L      LPL LA       +  TRG  F+    Y+  
Sbjct: 94  GKRQPVLIQHGIL--VDGMSWLLNPADQNLPLILADQGFDVWMGNTRGTRFSRRHKYLNP 151

Query: 184 VSTLAW 201
                W
Sbjct: 152 SQRAFW 157


>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 204

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 108 PGH-ELAAVHPDAGLALHGLGRVHGLRVDVGLDRALPHRNPHDPEIQTELMRNPGRIALR 284
           PG  E A   P+  L      R+H LR++ G+++A      +DP        +P +    
Sbjct: 83  PGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFV 142

Query: 285 TRL 293
           +RL
Sbjct: 143 SRL 145


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 108 PGH-ELAAVHPDAGLALHGLGRVHGLRVDVGLDRALPHRNPHDPEIQTELMRNPGRIALR 284
           PG  E A   P+  L      R+H LR++ G+++A      +DP        +P +    
Sbjct: 83  PGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFV 142

Query: 285 TRL 293
           +RL
Sbjct: 143 SRL 145


>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase ERECTA,
           Arabidopsis thaliana, EMBL:AC004484
          Length = 1048

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 83  TCPSACPSPWPRTRCGP 133
           T PS CP+ WP   C P
Sbjct: 55  TDPSTCPNDWPGISCDP 71


>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 492 ARTRRVPGDAFSYLISDRTF*KLVQRSKHYWDVNG*QVGR 611
           AR R  P D F+YL SD+    L Q +  Y    G   GR
Sbjct: 140 ARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGR 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,591
Number of Sequences: 28952
Number of extensions: 331280
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)