Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0718.Seq
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.46 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   3.3  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   5.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   5.7  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 194 KLPHVSAPCGLSGVTVEAPYNAALPGSATVASYMATPRVTATRDRVA 334
           ++P    P  L+   V+ P ++    SAT  + MA+P +  T D VA
Sbjct: 85  EIPVAPEPAPLASPLVQEPGSSTT--SATSGAVMASPPMPITTDNVA 129


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -3

Query: 302 EWPYNWQRWHCPGVPRCRGPLR*PPIGHTVRRHE 201
           +WP+ W        P+   P   P +   +R+H+
Sbjct: 80  QWPFAWGSLXRSSSPQTSAPTGPPIVRCALRKHK 113


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 376 VKETATEPPSCVLCCKQGHTANYRGCSKA 462
           V     E P C+   + G TAN     KA
Sbjct: 577 VSNRLVESPCCITMRRYGWTANMERIMKA 605


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 227 IGHTVRRHEAIFLPSGVASSATSTISYANLSRPL 126
           +G  + +  ++FL SGV S+ +   S    + P+
Sbjct: 11  LGEAIPKRRSVFLESGVNSADSFKASKVGPAPPI 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,311
Number of Sequences: 336
Number of extensions: 3197
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)