Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0718.Seq
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 39 6e-04
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 33 0.040
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 31 0.091
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.64
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 27 2.6
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 27 2.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 2.6
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 27 2.6
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 26 3.4
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 26 4.5
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 26 4.5
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 6.0
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 25 7.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNARPRCVKCLE-DHATTDCSRVKETATEPPSCVLCCKQGHTA 438
C+ C YGH AR+C +C C + H + +C + A++ C C + GH A
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIGHRSFEC----QQASDGQLCYKCNQPGHIA 169
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +1
Query: 253 QRGTPG-QCHRCQLYGHSARNCNARPRCVKCLE-DHATTDCSRVKETATEPPSCVLCCKQ 426
Q PG +C+ C GH AR C C C + H ++C+ ++ T C C
Sbjct: 11 QTTRPGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT----CYACGTA 66
Query: 427 GHTANYRGCSKAP 465
GH R C +P
Sbjct: 67 GHLV--RDCPSSP 77
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 232 GHRRGPLQRGTPGQ-CHRCQLYGHSARNCNA 321
GHR Q+ + GQ C++C GH A NC +
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHIAVNCTS 174
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 32.7 bits (71), Expect = 0.040
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 163 VALEATPEGKKIASCLRTVWPIGGHRRGPLQ-RGTPGQCHRCQLYGHSARNCNARPR 330
+ + TP G + S + W + G + GP + G C C H ++C RPR
Sbjct: 77 IGKKETPSGGR--SSIEGSWYVRGKKLGPAATKYRKGACENCGAMSHKVKDCMERPR 131
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 31.5 bits (68), Expect = 0.091
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNARPRCVKC--LEDHATTDCSRVKETATEPPSCVLCCKQGHTANYR 447
CH C+ GH +++C C C ++DH + C K+ C+ C GH A
Sbjct: 89 CHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWTKK-------CMNCGLLGHIA--A 138
Query: 448 GCSKAPRK 471
CS+ PRK
Sbjct: 139 RCSE-PRK 145
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 28.7 bits (61), Expect = 0.64
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +1
Query: 112 VHRMHSGRDKFAYDMVLVALEATPEGKKIASC----LRTVWPIGGHRRGPLQRGTPGQCH 279
VHR HS R + + A+ P+G +AS L +W IG RR RG G +
Sbjct: 492 VHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIY 551
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 372 ARERDSYGAAELCTLLQAGTHGQLPWMLQGSTEAPGKRAP 491
A R GAA+L TL A HG + ++Q PG+ AP
Sbjct: 17 AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAP 56
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 372 ARERDSYGAAELCTLLQAGTHGQLPWMLQGSTEAPGKRAP 491
A R GAA+L TL A HG + ++Q PG+ AP
Sbjct: 17 AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAP 56
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 183 GGQENCLMSPHRVAYRGS-P*RPPTTRHSRAVPPLPV 290
GG+EN + S + + + + P P TR + +VPPLP+
Sbjct: 54 GGKENNIASFQKPSSKATRPYIPSYTRLTYSVPPLPI 90
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 372 ARERDSYGAAELCTLLQAGTHGQLPWMLQGSTEAPGKRAP 491
A R GAA+L TL A HG + ++Q PG+ AP
Sbjct: 17 AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAP 56
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +2
Query: 137 INSRMIW--CS*H*KPHRRARK 196
INS + W CS H PHR+ARK
Sbjct: 24 INSLLPWYSCSEHEFPHRKARK 45
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 4.5
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 503 PEVLGGAFAGSFRGALEHPR*LAVCPCLQQSTQLGG-SVAVSFTREQSVVA*SSKHFTQR 327
PE+L GAFAG + +P VC ++ Q+GG SF R + VV + K R
Sbjct: 238 PELLCGAFAGVCGQTVSYP--FEVC---RRKMQIGGIRKNKSFLRLKQVVQTTYKEAGMR 292
Query: 326 G 324
G
Sbjct: 293 G 293
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 427 GHTANYRGCSKAPRKLPANAPP 492
GH+A Y+ +K K+P+ PP
Sbjct: 290 GHSATYKRIAKVDLKIPSFVPP 311
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 301 SARNCNARPRCVKCLEDHATTD 366
+AR CN PR ++ E H +D
Sbjct: 397 AARKCNLDPRALESFEQHMLSD 418
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 484 RLPGASVEPWSIHGS 440
RLPG + E W HG+
Sbjct: 142 RLPGCTAESWGYHGN 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,645
Number of Sequences: 5004
Number of extensions: 46402
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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