Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0718.Seq
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 40 0.002
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 40 0.002
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 37 0.009
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 36 0.016
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 36 0.016
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 36 0.021
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 36 0.021
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 33 0.11
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 33 0.19
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 32 0.25
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 30 1.0
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 1.8
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 1.8
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 29 2.4
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 29 2.4
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z80344-3|CAB02488.2| 491|Caenorhabditis elegans Hypothetical pr... 29 3.1
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 3.1
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 3.1
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 3.1
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 3.1
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 4.1
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 4.1
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 4.1
Z99271-3|CAB16473.1| 172|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 28 5.5
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 28 5.5
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +1
Query: 268 GQCHRCQLYGHSARNCNAR--PR--CVKC-LEDHATTDCS--RVKETATEPPSCVLCCKQ 426
G C C + GH A +C+ PR C C E H DC RV+ TEP C C ++
Sbjct: 616 GPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEP--CRRCAEE 673
Query: 427 GHTANYRGCSKAPRKLPAN 483
GH Y C P+ L N
Sbjct: 674 GHW-GYE-CPTRPKDLQGN 690
Score = 29.5 bits (63), Expect = 1.8
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = +1
Query: 235 HRRGPLQRGT-PGQCHRCQLYGHSARNCNAR--PR--CVKCLE-DHATTDCSRVKETATE 396
++RG G P CH C GH ++ C+ PR C C + H +DC + +
Sbjct: 558 NQRGNWDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPR--VPR 615
Query: 397 PPSCVLCCKQGHTANYRGCSKAPR 468
P C C +GH A K PR
Sbjct: 616 GP-CRNCGIEGHFAVDCDQPKVPR 638
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +1
Query: 268 GQCHRCQLYGHSARNCNAR--PR--CVKC-LEDHATTDCS--RVKETATEPPSCVLCCKQ 426
G C C + GH A +C+ PR C C E H DC RV+ TEP C C ++
Sbjct: 616 GPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEP--CRRCAEE 673
Query: 427 GHTANYRGCSKAPRKLPAN 483
GH Y C P+ L N
Sbjct: 674 GHW-GYE-CPTRPKDLQGN 690
Score = 29.5 bits (63), Expect = 1.8
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = +1
Query: 235 HRRGPLQRGT-PGQCHRCQLYGHSARNCNAR--PR--CVKCLE-DHATTDCSRVKETATE 396
++RG G P CH C GH ++ C+ PR C C + H +DC + +
Sbjct: 558 NQRGNWDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPR--VPR 615
Query: 397 PPSCVLCCKQGHTANYRGCSKAPR 468
P C C +GH A K PR
Sbjct: 616 GP-CRNCGIEGHFAVDCDQPKVPR 638
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 223 PIGGHRRGPLQRGTPGQCHRCQLYGHSARNC 315
P G R G RG PG C CQ +GH +R C
Sbjct: 153 PRSGRRTGRRGRGGPGHCFHCQEHGHISRMC 183
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical protein
ZC101.2b protein.
Length = 1160
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 992 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1044
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 244 GPLQRGTPGQCHR------CQLYGHSARNCNARPRCVKCLEDHATTDCSRVKE 384
G +RGTP C C HS R C++ RC+ C + T C R K+
Sbjct: 991 GDARRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKK 1043
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 259 GTPGQCHRCQLYGHSARNCNARPR-CVKCLE-DHATTDCSRVKETATEPPSCV 411
G C C+ YGH A C+A R C C + +H +C+ + + P+ V
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEPTKV 251
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 259 GTPGQCHRCQLYGHSARNCNARPR-CVKCLE-DHATTDCSRVKETATEPPSCV 411
G C C+ YGH A C+A R C C + +H +C+ + + P+ V
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEPTKV 251
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNARPRCVKCLED-HATTDCSRVKETAT-EPPSCVLCCKQGHTAN 441
CH C GH A C P + +D H D S + + +C C ++GH AN
Sbjct: 206 CHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYAN 263
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 32.7 bits (71), Expect = 0.19
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 250 LQRGTPGQCHRCQLYGHSARNCNAR 324
+ R GQCH C+ GH ARNC +
Sbjct: 568 VDRRFKGQCHYCKNVGHMARNCKKK 592
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 268 GQCHRCQLYGHSARNCNARPR-CVKCLEDHATTDCSRVKETATEPPSCVLCCKQGHTANY 444
G C C GH C +RPR C C +H T C AT P+ Q +N+
Sbjct: 346 GLCFGCLRSGHQRSKC-SRPRTCNHCKGNHHTVFCQSHNRNATRNPNQREFGSQQMNSNH 404
Query: 445 R 447
R
Sbjct: 405 R 405
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 265 PGQCHRCQLYGHSARNCNARPRCVKCLEDHATTDCSRV--KETATEPPSCVLCCKQG 429
PG C C+L+ + NC + V+C D C V K+ + +C C G
Sbjct: 340 PGPCIECKLFTTKSCNCGKTKKSVRCGSDQEVM-CETVCGKQLSCGQHNCERICHSG 395
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 223 PIGGHRRGPLQRGTPGQ-CHRCQLYGHSARNCNARPRCVKCLE-DHATTDCSRVKETATE 396
PI GH Q G G+ C+R L G+ R+C+ RC DH + C K A
Sbjct: 1224 PISGHCS--CQPGWRGKKCNRPCLKGYFGRHCSQSCRCANSKSCDHISGRCQCPKGYAGH 1281
Query: 397 PPSCVLCCKQG 429
SC C G
Sbjct: 1282 --SCTELCPDG 1290
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 223 PIGGHRRGPLQRGTPGQ-CHRCQLYGHSARNCNARPRCVKCLE-DHATTDCSRVKETATE 396
PI GH Q G G+ C+R L G+ R+C+ RC DH + C K A
Sbjct: 1224 PISGHCS--CQPGWRGKKCNRPCLKGYFGRHCSQSCRCANSKSCDHISGRCQCPKGYAGH 1281
Query: 397 PPSCVLCCKQG 429
SC C G
Sbjct: 1282 --SCTELCPDG 1290
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 27 RRNTRSPQRARRRANQK*PGRSVLPRHKRAPDAQRSR 137
RR + SP+R RRR ++K RS PR +R +RSR
Sbjct: 154 RRRSPSPKR-RRRPSEKPRKRSRSPRRERPRSPKRSR 189
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 27 RRNTRSPQRARRRANQK*PGRSVLPRHKRAPDAQRSR 137
RR + SP+R RRR ++K RS PR +R +RSR
Sbjct: 154 RRRSPSPKR-RRRPSEKPRKRSRSPRRERPRSPKRSR 189
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = +1
Query: 229 GGHR-RGPLQRGTPGQ-CHRCQLYGHSARNCN-----ARPRCVKCLE-DHATTDC 369
GG+ RG R GQ C+ C GH +R C RC +C E H + DC
Sbjct: 92 GGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
>Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical
protein T24D1.3 protein.
Length = 349
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 235 HRRGPLQRGTPGQCHRCQLYGHSARNCNARPRCVKCLEDHATTDCSRVKETATEPPSCVL 414
H R Q G+ G+C C S CN CL+ +C + ++ PSC L
Sbjct: 261 HPRRRNQDGSHGECTMCFEVPVSPLGCN------NCLQIIGCEECVDIWYRSSSKPSCPL 314
Query: 415 C 417
C
Sbjct: 315 C 315
>Z80344-3|CAB02488.2| 491|Caenorhabditis elegans Hypothetical
protein F15D4.5 protein.
Length = 491
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +1
Query: 250 LQRGTPGQCHRCQLYGHSARNCNARPRCVKCLEDHATTDCSRVKETATEPPSCVLCCKQG 429
L+ T QC R + + +C +CLE + T + ++ T P CK
Sbjct: 378 LKNHTSEQCRRVSTWFDRREKLTEQKKCHQCLEVYETVEFCGTRDNHTNCPMENTFCKYC 437
Query: 430 HT--ANYRGCSKAPRKLPA 480
T N G +A PA
Sbjct: 438 KTLKGNQPGWKEAAAHHPA 456
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R+C
Sbjct: 253 GERNNNCFNCQQP--GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R+C
Sbjct: 367 GERNNNCFNCQQP--GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R+C
Sbjct: 253 GERNNNCFNCQQP--GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R+C
Sbjct: 367 GERNNNCFNCQQP--GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 280 RCQLYGHSARNCNARP--RCVKCLEDHATTDCSRVKETATEPPSCVLC-CKQGHTANYRG 450
+C + + C+ +P + ++C ++ ++CS + +P V+C C QG Y
Sbjct: 1927 KCTITNGTHFECDCKPGFKGLRCEQETKCSECSNEAKCIKKPSGTVICQCPQGLGGEY-- 1984
Query: 451 CSK 459
C K
Sbjct: 1985 CEK 1987
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R+C
Sbjct: 253 GERNNNCFNCQQP--GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R+C
Sbjct: 367 GERNNNCFNCQQP--GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 YGHSARNCNARPRCVKCLED-HATTDCSRVKETATEPPSCVLCCKQGHTANYRGCSKAPR 468
+G RN N C C + H ++DC ++ EP C C + GHT+ + PR
Sbjct: 151 HGGGERNNN----CFNCQQPGHRSSDCPEPRKER-EPRVCYNCQQPGHTSRECTEERKPR 205
Query: 469 K 471
+
Sbjct: 206 E 206
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R C
Sbjct: 154 GERNNNCFNCQQP--GHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 YGHSARNCNARPRCVKCLED-HATTDCSRVKETATEPPSCVLCCKQGHTANYRGCSKAPR 468
+G RN N C C + H ++DC ++ EP C C + GHT+ + PR
Sbjct: 151 HGGGERNNN----CFNCQQPGHRSSDCPEPRKER-EPRVCYNCQQPGHTSRECTEERKPR 205
Query: 469 K 471
+
Sbjct: 206 E 206
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R C
Sbjct: 154 GERNNNCFNCQQP--GHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 YGHSARNCNARPRCVKCLED-HATTDCSRVKETATEPPSCVLCCKQGHTANYRGCSKAPR 468
+G RN N C C + H ++DC ++ EP C C + GHT+ + PR
Sbjct: 151 HGGGERNNN----CFNCQQPGHRSSDCPEPRKER-EPRVCYNCQQPGHTSRECTEERKPR 205
Query: 469 K 471
+
Sbjct: 206 E 206
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 187 GKKIASCLRTVWPIGGHRRG----PLQRGTPGQCHRCQLYGHSARNC 315
G++ +C P GHR P + P C+ CQ GH++R C
Sbjct: 154 GERNNNCFNCQQP--GHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
>Z99271-3|CAB16473.1| 172|Caenorhabditis elegans Hypothetical
protein Y43F4A.3 protein.
Length = 172
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNARPRCVKCLEDHATTDCSRVKETATEPP-SCVLCCKQGHTANYRG 450
C Y H + C KC++ +D T TEP SC C H+ N
Sbjct: 36 CRTTSFYIHRKNRARSNGYCTKCIQPLIQSDAGH-HLTCTEPKVSCAHC--HEHSENQAK 92
Query: 451 C 453
C
Sbjct: 93 C 93
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 268 GQCHRCQLYGHSARNCNARPR 330
G C C GH R+C RPR
Sbjct: 113 GACENCGAMGHQKRDCFDRPR 133
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.9 bits (59), Expect = 5.5
Identities = 32/92 (34%), Positives = 43/92 (46%)
Frame = +3
Query: 12 GA*TPRRNTRSPQRARRRANQK*PGRSVLPRHKRAPDAQRSR*IRV*YGARSTRSHTGGQ 191
G+ +PRR +RSP+R R P R R R+ D +RSR R S+RS + +
Sbjct: 83 GSRSPRRRSRSPRRRSRT-----PPR----RRSRSRDRKRSRRSR---SRSSSRSRSPVR 130
Query: 192 ENCLMSPHRVAYRGSP*RPPTTRHSRAVPPLP 287
E+ S R SP R SR+ PLP
Sbjct: 131 ESRRRSESR---SPSPKRDLKREASRSRSPLP 159
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
T01D3.7 protein.
Length = 2882
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNARPRCVKCLEDHATTDCSRVKETATEPPSCVLCCKQG 429
C+ C L G C RP C ED+ +DCS+ + E +C C G
Sbjct: 891 CNSCSLNGI----CT-RPGFCSCFEDYGGSDCSKCVGDSCE--ACDFDCNHG 935
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 156 GARSTRSHTGGQENCLMSPHRVAYRGSP*RPPTTRHSRAVPPLPVIWP 299
GA+ + GGQ PH++ Y +P P + PPLP+ P
Sbjct: 392 GAQPGAAQAGGQPGPF--PHQIFYAPAPANRPEFMNLIPPPPLPMAGP 437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,668,604
Number of Sequences: 27780
Number of extensions: 303438
Number of successful extensions: 1080
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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