Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0718.Seq
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   0.54 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.71 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.71 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.71 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.7  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 447 TVVGRVSLLAAEYTARRLRS 388
           T+VG   ++AA  T RRLRS
Sbjct: 51  TIVGNTLVIAAVITTRRLRS 70


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 48  QRARRRANQK*PGRSVLPRHKRAPDAQRSR*IRV*YGARST-RSH 179
           +R R RA Q         RH+ A DA+ S      +  RST RSH
Sbjct: 225 RRLRERARQSRINAVQSTRHREADDAEESVSSETNHNERSTPRSH 269


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 48  QRARRRANQK*PGRSVLPRHKRAPDAQRSR*IRV*YGARST-RSH 179
           +R R RA Q         RH+ A DA+ S      +  RST RSH
Sbjct: 225 RRLRERARQSRINAVQSTRHREADDAEESVSSETNHNERSTPRSH 269


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 48  QRARRRANQK*PGRSVLPRHKRAPDAQRSR*IRV*YGARST-RSH 179
           +R R RA Q         RH+ A DA+ S      +  RST RSH
Sbjct: 225 RRLRERARQSRINAVQSTRHREADDAEESVSSETNHNERSTPRSH 269


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 67  QIKNDLVGQSYPVISVHRMHSGRDKFAYDMVLVALE 174
           Q+    +  +YPV +  R+ S  D   YD  +  LE
Sbjct: 580 QVNKRSIHNNYPVHTFGRLTSKHDNSLYDEYIPFLE 615


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 211 GDMRQFSCPPVWLLVLRAPYHTRIYRDR 128
           G  RQF      + +L  PY+T+ +R R
Sbjct: 223 GIARQFYNDDANVYILPDPYNTKFFRYR 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,903
Number of Sequences: 438
Number of extensions: 3715
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)