Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0718.Seq
(577 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 41 5e-04
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 35 0.034
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 32 0.24
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 32 0.32
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 32 0.32
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 31 0.55
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 31 0.55
At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing ... 31 0.55
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 0.73
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 31 0.73
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 31 0.73
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro... 29 2.9
At5g23100.1 68418.m02702 expressed protein contains Pfam profile... 28 3.9
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 28 3.9
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ... 28 3.9
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 28 3.9
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 28 5.1
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 28 5.1
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ... 28 5.1
At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) id... 27 6.8
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 27 6.8
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 27 6.8
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 27 6.8
At1g49810.1 68414.m05585 sodium hydrogen antiporter, putative si... 27 6.8
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 27 9.0
At4g34230.1 68417.m04864 cinnamyl-alcohol dehydrogenase, putativ... 27 9.0
At4g17410.1 68417.m02607 expressed protein 27 9.0
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 27 9.0
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 27 9.0
At2g18080.1 68415.m02102 serine carboxypeptidase S28 family prot... 27 9.0
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 9.0
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 9.0
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 27 9.0
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 271 QCHRCQLYGHSARNCNARPRCVKC-LEDHATTDCSRVKETATEPPSCVLCCKQGHTA 438
+C C+ GH A NC+ C C H DCS A + C C KQGH A
Sbjct: 94 RCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLA 150
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNARPRCVKCLE-DHATTDCSRVKETATEPPSCVLCCKQGHTANYRG 450
C+ C L GH A C A RC C E H ++CS C C K GH A R
Sbjct: 76 CNNCGLPGHIAAECTAESRCWNCREPGHVASNCS-------NEGICHSCGKSGHRA--RD 126
Query: 451 CSKA 462
CS +
Sbjct: 127 CSNS 130
Score = 31.9 bits (69), Expect = 0.32
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Frame = +1
Query: 268 GQCHRCQLYGHSARNC-NARPR------CVKCL-EDHATTDCSRVKETATEPPSCVLCCK 423
G CH C GH AR+C N+ R C C + H DC T +C C
Sbjct: 112 GICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC-------TNDKACKNCRT 164
Query: 424 QGHTANYRGCSKAP 465
GH A R C P
Sbjct: 165 SGHIA--RDCRNDP 176
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNARPRCVKC-LEDHATTDCSRVKETATEPPSCVLCCKQGHTAN 441
C+ C+ GH AR+C+ C C L H +C T C C + GH A+
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAEC-------TAESRCWNCREPGHVAS 106
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNARPRCVKC-LEDHATTDCSR 375
C C+ GH AR+C P C C + H C +
Sbjct: 159 CKNCRTSGHIARDCRNDPVCNICSISGHVARHCPK 193
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 35.1 bits (77), Expect = 0.034
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 259 GTPGQCHRCQLYGHSARNCNARPR----CVKC-LEDHATTDC-SRVKETATEPPSCVLCC 420
G G C+ C GH AR+C + + C +C H DC R +C C
Sbjct: 227 GGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCG 286
Query: 421 KQGHTANYRGCS 456
K+GH A R CS
Sbjct: 287 KEGHFA--RECS 296
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 232 GHRRGPLQRGTPGQCHRCQLYGHSARNCNAR 324
G +RG ++ G G C+ C GH AR+C +
Sbjct: 187 GDQRGAVKGGNDG-CYTCGDVGHFARDCTQK 216
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 232 GHRRGPLQRGTPGQCHRCQLYGHSARNCNAR 324
G +RG + G G C+ C GH AR+C +
Sbjct: 153 GDQRGATKGGNDG-CYTCGDVGHVARDCTQK 182
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Frame = +1
Query: 265 PGQCHRCQLYGHSARNCN-------ARPRCVKCLED-HATTDCSRVKETATEPPS-CVLC 417
P C++C GH AR+C+ A C C E+ H + C + P C C
Sbjct: 33 PRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWC 92
Query: 418 CKQGHTAN 441
Q H N
Sbjct: 93 GNQDHRFN 100
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +1
Query: 274 CHRCQLYGHSARNC-------NARPRCVKCLE-DHATTDCS-RVKETATEPPSCVLCCKQ 426
C +C+ GHS +NC + + C C + H+ + C +++ T+ SC +C Q
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQ 160
Query: 427 GH 432
GH
Sbjct: 161 GH 162
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 31.9 bits (69), Expect = 0.32
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Frame = +1
Query: 172 EATPEGKKIAS-CLRTVW--PIGGHRRGPLQRGTPGQCHRCQLYGHSARNC-----NA-- 321
+ TP +K AS ++ + P+ +R +GT C C GH C NA
Sbjct: 229 KGTPAARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADR 288
Query: 322 RPRCVKC-LEDHATTDCSRVKETATEPPS-----CVLCCKQGHTANYRGCSKAPRKLPAN 483
+ RC C + H C + K T+ S C +C ++GH N R C K P
Sbjct: 289 KFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGH--NSRTCRK-----PTG 341
Query: 484 APPKTSG 504
P SG
Sbjct: 342 VNPSCSG 348
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 31.1 bits (67), Expect = 0.55
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Frame = +1
Query: 223 PIGGHRRGPLQRGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLE-DHATTDC 369
P G G RG P G+C C + GH AR+C A + +C +C E H +C
Sbjct: 83 PRGSRDNG--SRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 31.1 bits (67), Expect = 0.55
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Frame = +1
Query: 223 PIGGHRRGPLQRGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLE-DHATTDC 369
P G G RG P G+C C + GH AR+C A + +C +C E H +C
Sbjct: 42 PRGSRDNG--SRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
>At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing
protein
Length = 311
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 248 GPLR*PPIGHTVRRHEAIFLPSGVASSATSTISYANLSRP 129
G LR P+G + R+++ + PS ++ ST+S N S P
Sbjct: 65 GTLRNVPVGGSYRKNKRVKRPSTATTTTASTVSTTNSSSP 104
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 256 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLE-DHATTDC 369
RG P G+C C + GH AR+C A + +C +C E H +C
Sbjct: 51 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 256 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLE-DHATTDC 369
RG P G+C C + GH AR+C A + +C +C E H +C
Sbjct: 62 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 256 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLE-DHATTDC 369
RG P G+C C + GH AR+C A + +C +C E H +C
Sbjct: 92 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
protein contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 927
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 551 SRYESRFRRAGRRSLGPEVLGGAFAGSFRGALEHPR 444
S+Y F + G RSLG E+ GG F G +P+
Sbjct: 660 SKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPK 695
>At5g23100.1 68418.m02702 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 277
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -1
Query: 334 RNAVARCSYARSGHITGNGGTARECRVVGGLYGDPR*ATRCGDMRQFSCPPVWLLVLRAP 155
R+ +A S AR G+ G+ RVVG L+G R + + PP +L+ L P
Sbjct: 68 RSVIATLSRARPGNQNSGLGS----RVVGTLFGSRRGHVHFSIQKDPNSPPAFLIELATP 123
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +1
Query: 274 CHRCQLYGHSARNC----NARPRCVKCLE-DHATTDCSRVKETATEPPSCVLCCKQGHTA 438
C+ C GH++ NC R C C +H CS+ + C +C K GH A
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD-------CYICKKTGHRA 220
>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
protein / G-protein (XLG) identical to extra-large
G-protein (XLG) [Arabidopsis thaliana] GI:3201680
Length = 888
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 139 KFAYDMVLVALEATPEGKKIASCLRTVWPIGGHRRGPLQRGTPGQCHR 282
K+ VL A+ + PEG+K +C+ +PI +RG L G+C R
Sbjct: 246 KYCNSCVLRAMGSMPEGRKCVTCIG--FPIDESKRGSL-----GKCSR 286
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = +1
Query: 262 TPGQCHRCQL---YGHSARNCNARPR 330
TPGQ RC L GH A NC +P+
Sbjct: 257 TPGQQERCFLCGQMGHFASNCEGKPK 282
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 27 RRNTRSPQRARRRANQK*PGRSVLPRHKRAPDAQRSR 137
R +RSP+R+R + P R PR R+P +RSR
Sbjct: 115 RSRSRSPRRSRSPRRSRSPPRRRSPRRSRSP-RRRSR 150
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 21 TPRRNTRSPQRARRRANQK*PGRSVLPRHKRAPD 122
+PRR+ RSP+R+R ++ P RS PR + D
Sbjct: 120 SPRRS-RSPRRSRSPPRRRSPRRSRSPRRRSRDD 152
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 27 RRNTRSPQRARRRANQK*PGRSVLPRHKRAPDAQRSR 137
R +RSP+R+R + P R PR R+P +RSR
Sbjct: 115 RSRSRSPRRSRSPRRSRSPPRRRSPRRSRSP-RRRSR 150
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 21 TPRRNTRSPQRARRRANQK*PGRSVLPRHKRAPD 122
+PRR+ RSP+R+R ++ P RS PR + D
Sbjct: 120 SPRRS-RSPRRSRSPPRRRSPRRSRSPRRRSRDD 152
>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 861
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 139 KFAYDMVLVALEATPEGKKIASCLRTVWPIGGHRRGPLQRGTPGQCHR 282
K+ ++ V A+ A PEG+K +C+ G+R +R + G+C R
Sbjct: 235 KYCFNCVRRAMGAMPEGRKCQACI-------GYRIDESKRASLGKCSR 275
>At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD)
identical to SP|P48523 Cinnamyl-alcohol dehydrogenase
(EC 1.1.1.195) (CAD) [Arabidopsis thaliana]
Length = 365
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 22 LRVVIRGVPKELDVEQIKNDLVGQSYPVISVHRM 123
++V+ G+ D+ QIKNDL +YP++ H +
Sbjct: 40 IKVICCGIC-HTDIHQIKNDLGMSNYPMVPGHEV 72
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 223 PIGG--HRRGPLQRGTPGQCHRCQLYGHSARNCN 318
P GG +++ RG+ G C C GH A++C+
Sbjct: 77 PGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCD 110
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 229 GGHRRGPLQRGTPGQCHRCQLYGHSARNC 315
GG RR G G+C+ C GH AR+C
Sbjct: 121 GGGRRS----GGEGECYMCGDVGHFARDC 145
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 256 RGTPGQCHRCQLYGHSARNC 315
+GT +C +C+ GH AR+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 256 RGTPGQCHRCQLYGHSARNC 315
+GT +C +C+ GH AR+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
>At1g49810.1 68414.m05585 sodium hydrogen antiporter, putative
similar to NhaD [Vibrio parahaemolyticus]
gi|3123728|dbj|BAA25994; Na+/H+ aniporter (NhaD) family
member, PMID:11500563
Length = 420
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 461 LHGSSRQTRPLKPLAQDFGAPRAETGFRTGSGA 559
+HG T P LA D APR + F G GA
Sbjct: 197 VHGMGLNTPPTPLLAYDRSAPRGKLVFGVGFGA 229
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 274 CHRCQLYGHSARNCNAR 324
C+RC+ GH AR+C+ +
Sbjct: 926 CYRCKKVGHLARDCHGK 942
>At4g34230.1 68417.m04864 cinnamyl-alcohol dehydrogenase, putative
similar to cinnamyl alcohol dehydrogenase, Nicotiana
tabacum [SP|P30359], Populus deltoides, PATCHX:G288753
Length = 357
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 10 EERELRVVIRGVPKELDVEQIKNDLVGQSYPVISVHRM 123
E+ +R++ G+ D+ Q KNDL +YP++ H +
Sbjct: 35 EDVNIRIICCGIC-HTDLHQTKNDLGMSNYPMVPGHEV 71
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 226 IGGHRRGPLQRGTPGQ---CHRCQLYGHSARNCN 318
+GG G ++R TP CHRC + GH ++C+
Sbjct: 103 MGGRGFG-MERTTPPPGYVCHRCNVSGHFIQHCS 135
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 244 GPLQR-GTPGQCHRCQLYGHSARNCNARPRCVKCLEDHATTDCSRVKETATEPPSCVLCC 420
GP++ G C +C GH +R+C A+ + + ++K +++ C C
Sbjct: 259 GPVKSTSAAGDCFKCGKPGHWSRDCTAQ-------SGNPKYEPGQMKSSSSS-GECYKCG 310
Query: 421 KQGH 432
KQGH
Sbjct: 311 KQGH 314
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 229 GGHRRGPLQRGTPGQCHRCQLYGHSARNCNAR 324
GG G + G+ +C+ C GH AR C +R
Sbjct: 83 GGGDGGRGRGGSDLKCYECGESGHFARECRSR 114
>At2g18080.1 68415.m02102 serine carboxypeptidase S28 family protein
similar to SP|Q9NQE7 Thymus-specific serine protease
precursor (EC 3.4.-.-) {Homo sapiens}; contains Pfam
profile PF05577: Serine carboxypeptidase S28
Length = 365
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 379 KETAT-EPPSCVLCCKQ-GHTANYRGCSKAP 465
K+ +T E PS ++ C+ GH ++ RGC ++P
Sbjct: 293 KQNSTHEMPSYIIKCRNCGHGSDIRGCPQSP 323
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 229 GGHRRGPLQRGTPGQCHRCQLYGHSARNC 315
GG RRG ++ +C+ C GH AR C
Sbjct: 79 GGGRRGGIE---DSKCYECGELGHFAREC 104
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 27 RRNTRSPQRARRRANQK*PGRSVLPRHKRAPDAQRS 134
RR + SP+R RR + RS+ PR +R+P +RS
Sbjct: 112 RRRSPSPRR-RRSPDYGYARRSISPRGRRSPPRRRS 146
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 229 GGHRRGPLQRGTPGQCHRCQLYGHSARNC 315
GG RRG ++ +C+ C GH AR C
Sbjct: 79 GGGRRGGIE---DSKCYECGELGHFAREC 104
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 27 RRNTRSPQRARRRANQK*PGRSVLPRHKRAPDAQRS 134
RR + SP+R RR + RS+ PR +R+P +RS
Sbjct: 112 RRRSPSPRR-RRSPDYGYARRSISPRGRRSPPRRRS 146
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 200 PHVSAPCGLSGVTVEAPYNAALPGSATVASYMATP 304
PH P + T++ P A PG ++Y A P
Sbjct: 146 PHAPVPSAMDHKTMDQPVTAYPPGHGAPSAYPAPP 180
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,991
Number of Sequences: 28952
Number of extensions: 289191
Number of successful extensions: 933
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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