Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0717.Seq
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.54 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.9  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   3.8  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    27   3.8  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.0  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   6.6  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.6  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   6.6  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   8.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   8.7  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +2

Query: 320 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 472
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 695 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 561
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 289 TKYSSSIFSPLWHSNLFKVKLSAHLDTHRRAPR*DFD 179
           T + + I SPL    L +  LS H+ TH  AP   FD
Sbjct: 141 TDFEAGIDSPL----LCQASLSTHVKTHNNAPLTSFD 173


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = -2

Query: 747 QERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEA 568
           +   V L  LP+ G      VES     + P  ALP  PLSFS     P ++     PE+
Sbjct: 398 ENELVKLFFLPLDGD-----VESPHPTSTMPE-ALPREPLSFSLPEKAPEKATNISIPES 451

Query: 567 A 565
           A
Sbjct: 452 A 452


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -2

Query: 228 CRPTSTLTEEHRDRILILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCNYELFNRNN 49
           C P  ++ +   +RILI  R F         S  + +   +R    AA KC +E      
Sbjct: 32  CNPCYSIEKLKSNRILIAVRLF--SFAFSSFSTTLRI---LRDFIIAASKCEFEKIWSTT 86

Query: 48  FSIRYWSWNYR 16
           FSI + S+N++
Sbjct: 87  FSISFLSFNFK 97


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 433 KAFAKGVFINQERKLEVRRRLDTALV*P*IC-HL 531
           +A A GVF N   K+ V  +LDT  V P +C HL
Sbjct: 88  EALAFGVFPNFPSKMGVTVQLDTTYVAPALCSHL 121


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 729 LSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 604
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 365 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 472
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 295 PCTKYSSSIFSPLWHSNLFKVKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYL 134
           P   Y +S++  L+   L    L   L +    PR    +EP +    AHRR L
Sbjct: 343 PLPSYQNSMYDRLY-DGLSYSNLDTPLPSGATTPRRRDSMEPTYASNEAHRRQL 395


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -1

Query: 397 TSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPLWHSNLFKVKL 227
           T    +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 601 PGVQNLWFPGSCPPSHCSNVGGSLDDIFTVRLGRYLIAFEPLTFV 467
           P V+   F  S  PS+     G +D ++   + RY   FE L F+
Sbjct: 518 PPVEQGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFL 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,038
Number of Sequences: 5004
Number of extensions: 63364
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)