Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0717.Seq
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0189 + 32214702-32215154                                         29   3.0  
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206...    29   3.9  
09_02_0573 - 10804171-10805096,10805188-10805377,10805920-108063...    28   6.9  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    28   6.9  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   9.1  

>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 672 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 565
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>05_01_0269 +
           2062467-2062475,2063252-2063303,2063668-2063743,
           2064156-2064288,2064400-2064578,2065228-2065495,
           2066250-2066342,2066667-2066776,2066887-2066905,
           2066985-2067170
          Length = 374

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 295 PCTKYSSSIFSPLWHSNLFKVKLSAHL 215
           P T+  S   +P+WH NL+K++ S  L
Sbjct: 133 PATRPKSIFRNPVWHYNLYKIQKSESL 159


>09_02_0573 -
           10804171-10805096,10805188-10805377,10805920-10806363,
           10806689-10807552,10809269-10809802
          Length = 985

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 231 FTLNKLECQSGLKMLLEYFVHGIIEYDLGSIL 326
           F L +  CQ G++ L E   + +  YDLG +L
Sbjct: 774 FELCQTACQEGIQQLCETTAYKVTFYDLGHVL 805


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -1

Query: 382 IRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPLWHSNLFKVKLSAHLDTH 206
           I+M P  P  H+L     N     +    P   YSS+I  P  H+N F   +   L TH
Sbjct: 53  IKMVPPGP--HFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 57  RNNFSIRYWSWNYRGC 10
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,645,510
Number of Sequences: 37544
Number of extensions: 463063
Number of successful extensions: 1168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)