Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0717.Seq
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 649 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 545
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 183 LILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRY 34
           +I+     + R  ++I +N++V      + SA HK NYEL    +F +RY
Sbjct: 83  IIIEHGCTKGRSEEEIQSNINVYSEFPISLSALHKHNYEL--NQDFELRY 130


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 738 AVNLSILPVSGPGEISRVESN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAAR 562
           A N S+   S P  + R  S  +  +TP G A P  PLS S +    P+S   G P + +
Sbjct: 513 ATNTSVSS-STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRK 571

Query: 561 RAI 553
           R++
Sbjct: 572 RSM 574


>Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical
           protein K08F4.4 protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 402 FLDRRKTNISESICQRCFHQSRTKVRGSKAIRYRPSLTVNMSS 530
           FLD+ +    E+I Q  F Q +T+    K  R R + ++NM+S
Sbjct: 130 FLDQIRNMFPENIIQATFQQVQTEYMPIKPSRVRNATSMNMTS 172


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 175  EPAFFRTPAHRRYLRK 128
            EP+F RTPAH  YL K
Sbjct: 1451 EPSFLRTPAHMTYLAK 1466


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 654 QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 749
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 414  RKTNISESICQRCFHQSRTKVRGSKAIRYRPSLTVNMSSSDPPTLLQWLG 563
            ++ N   S   R F ++R   R    I    +   N++++DPP    W+G
Sbjct: 1427 KRPNTRYSFVVRAFMEARQHGRNFDRINELANYCANITANDPPLSEYWIG 1476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,124,686
Number of Sequences: 27780
Number of extensions: 383562
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)